Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28f10
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 85 7e-18
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 60 2e-10
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 59 4e-10
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 40 2e-04
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 40 3e-04
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 38 0.001
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 32 0.056
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 31 0.097
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 31 0.097
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 29 0.69
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 2.8
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 3.7
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 26 3.7
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 3.7
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.8
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 25 6.4
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 25 8.5
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 8.5
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 85.0 bits (201), Expect = 7e-18
Identities = 50/147 (34%), Positives = 76/147 (51%)
Frame = +2
Query: 128 TMNVKKDNDFYLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGN 307
T N+ + R AF L DRD DG++T EL ++R+LG + + D+I + GN
Sbjct: 3 TRNLTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGN 62
Query: 308 GLIDENDFMQWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQA 487
G ID +F+ + + D+EEE+ AFKVFD+D NGYIT +EL
Sbjct: 63 GTIDFTEFLTMMAR---------KMKDTDNEEEVRE----AFKVFDKDGNGYITVEELTH 109
Query: 488 ALEMIGEPVTDAQLNQVLALGDIDHDG 568
L +GE ++ ++ ++ D D DG
Sbjct: 110 VLTSLGERLSQEEVADMIREADTDGDG 136
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/67 (32%), Positives = 45/67 (67%)
Frame = +2
Query: 146 DNDFYLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDEN 325
DN+ +R AF + D+D +G++T EL +L +LG +S + ++D+I++A G+G+I+
Sbjct: 82 DNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYE 141
Query: 326 DFMQWVT 346
+F + ++
Sbjct: 142 EFSRVIS 148
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 60.1 bits (139), Expect = 2e-10
Identities = 42/151 (27%), Positives = 71/151 (47%)
Frame = +2
Query: 116 RIDFTMNVKKDNDFYLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDAS 295
R++ T ++D + AF L D D D + EL+ +R LG + +++D
Sbjct: 28 RVEITEEQRQD----INEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFD 83
Query: 296 KTGNGLIDENDFMQWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRD 475
KTG G + DF++ +T+ D EEI R AF++FD D+ G I+
Sbjct: 84 KTGKGYLQMEDFVRVMTE---------KIVERDPLEEIKR----AFELFDDDETGKISLR 130
Query: 476 ELQAALEMIGEPVTDAQLNQVLALGDIDHDG 568
L+ + + E + D +L ++ D+D DG
Sbjct: 131 NLRRVAKELNENIDDQELEAMIEEFDLDQDG 161
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 59.3 bits (137), Expect = 4e-10
Identities = 45/146 (30%), Positives = 79/146 (54%)
Frame = +2
Query: 131 MNVKKDNDFYLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNG 310
M K+ ++ AF L D D DG + + + +LR+LGI V+D ++L K +++ G+
Sbjct: 1 MPASKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTD---AELAKLSNELGDA 57
Query: 311 LIDENDFMQWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAA 490
IDE FM +V+ L T +SEEE + AF+VFD+D++GYI +
Sbjct: 58 -IDEKKFMSFVSN-----KLRET----ESEEEYIK----AFRVFDKDNSGYIETAKFADY 103
Query: 491 LEMIGEPVTDAQLNQVLALGDIDHDG 568
++ +GE ++D ++ ++ D + G
Sbjct: 104 MKTLGEKLSDNEVQLMVQEADPTNSG 129
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 40.3 bits (90), Expect = 2e-04
Identities = 33/131 (25%), Positives = 61/131 (46%)
Frame = +2
Query: 149 NDFYLRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDEND 328
+D + AF L DR G + + +LR G + + + ++ + L E D
Sbjct: 4 DDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPT-------LAEITEIESTLPAEVD 56
Query: 329 FMQWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGE 508
Q++ + G D+ GD EE + F+VFD+D G I EL+ L +GE
Sbjct: 57 MEQFLQVLNRPNGFDMP---GDPEE-----FVKGFQVFDKDATGMIGVGELRYVLTSLGE 108
Query: 509 PVTDAQLNQVL 541
+++ +++++L
Sbjct: 109 KLSNEEMDELL 119
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 39.9 bits (89), Expect = 3e-04
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Frame = +2
Query: 257 SDDLISDLIKDASKTGNGLIDENDFMQWVTKIQALQGLDVTTSGGDSEEEITRDLLAAFK 436
S+ L S L + G G +D +F + L V + G+ EE+ L AFK
Sbjct: 54 SNPLASRLFSVVDEDGGGDVDFQEF---------INSLSVFSVHGNKEEK----LKFAFK 100
Query: 437 VFDRDDNGYITRDELQAALE-MIGEPVTDAQLNQVL--ALGDIDHD 565
++D D +GYI+ EL L+ M+G + + QL Q++ + ++D D
Sbjct: 101 IYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKD 146
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 37.5 bits (83), Expect = 0.001
Identities = 31/127 (24%), Positives = 57/127 (44%)
Frame = +2
Query: 161 LRTAFGLLDRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDENDFMQW 340
L+ AF LLD+D DG++ +++ ML +L + S+D I+ + + N +
Sbjct: 50 LKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESI----------NPPINL 99
Query: 341 VTKIQALQGLDVTTSGGDSEEEITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTD 520
+ A+ + S DLL AF FD +G I ++ AL +G+ +
Sbjct: 100 AAFLTAMGSMLCRISP-------RNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDP 152
Query: 521 AQLNQVL 541
++ +L
Sbjct: 153 QEVESIL 159
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 32.3 bits (70), Expect = 0.056
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 431 FKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGDIDHDG 568
F VFD D NGYI E AL + + +L L D+D++G
Sbjct: 69 FNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAFQLYDLDNNG 114
Score = 31.1 bits (67), Expect = 0.13
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Frame = +2
Query: 395 SEEEITRDLLAAFKVFDRDDNGYITRDEL----QAALEMIG--------EPVTDAQLNQV 538
S E+ L+ AF+++D D+NG I+ DE+ A +M+G E + ++N++
Sbjct: 93 SRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKI 152
Query: 539 LALGDIDHDGPDRL*RVC 592
+ D + DG L C
Sbjct: 153 FNMMDKNKDGQLTLEEFC 170
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 31.5 bits (68), Expect = 0.097
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 410 TRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLALGD 553
+ +L + D D GYI +DE A+E+I ++ L +LA D
Sbjct: 335 SEELARIWDTVDTQDRGYIDKDEFAVAMEIIKLRLSGKSLASILAYDD 382
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 31.5 bits (68), Expect = 0.097
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 404 EITRDLLAAFKVFDRDDNGYITRDELQAALEMIGEPVTDAQLNQVLAL 547
E+ + AF +FD GYI ++L+ + +GE +T QL +L L
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDL 56
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 28.7 bits (61), Expect = 0.69
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 333 MKSFSSIKPLPVLLASLMRSEMRSSLTSMPRLRN 232
M SFSSI LPV M +E+ + ++PR +N
Sbjct: 197 MNSFSSINRLPVEEKEKMHAELDEIIKTIPRAQN 230
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 330 KSFSSIKPLPVLLASLMRSEMRSSLTSMPRLRNMNCSSAGVT*PSLSR 187
+S SS+ P P M S M ++ SMP L N + ++ G T +SR
Sbjct: 346 QSKSSVFPQPASAMKPMASPMLPNVNSMPYLSNGDHNNNGNTSSPVSR 393
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 3.7
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -1
Query: 330 KSFSSIKPLPVL--LASLMRSEMRSSLTSMPRLRNMNCSSAGVT*PSLSRSNSPN 172
++FSS PLP L LASL +E R S S+ ++ + S+ T PS SP+
Sbjct: 419 ENFSSW-PLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPSSQSMQSPS 472
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 40 NDKKY*VIKIVTCVSEGHILIWCFRTH 120
ND Y +V+C +G I+ W RTH
Sbjct: 238 NDSPY---NLVSCSRDGSIIFWDMRTH 261
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 251 EVSDDLISDLIKDASKTGNGLIDENDFMQ 337
E ++++S L+++ TGN L + DF Q
Sbjct: 402 ETLNNMVSALVEEQQSTGNELFRKGDFSQ 430
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 185 DRDSDGHVTPAELQFMLRNLGIEVSDDLISDLIKDASKTGNGLIDEN 325
+ D D V +++ +LG E+S D++ D + GN L+DE+
Sbjct: 919 EADDDEGVDDFAVEYGGPDLGGEISADVVDDFDEFEHFQGNYLLDED 965
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 6.4
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 315 IKPLPVLLASLMRSEMRSSLTSMPRLRNMNCSSAGVT*P-SLSRSNSP 175
++PLP+ L S+ E S S+PR SSA +T P S+++SN P
Sbjct: 719 LRPLPLELLSISYIEDSPSRGSLPR----RPSSALLTNPISITKSNPP 762
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 197 DGHVTPAE--LQFMLRNLGIEVSDDLISDLIKDASKTGN 307
DG V E L+ M + LG+E SDD DL K + + N
Sbjct: 545 DGRVGREEAWLKSMAQELGVESSDDEDPDLPKKSESSKN 583
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 338 WVTKIQALQGLDVTTS-GGDSEEEITRDLLAAFKVFDRDDNGYITRDE 478
+++ + L D+T G DS +E+ +DL V + +G T DE
Sbjct: 363 YISITKKLDTHDITRGRGSDSPKEVMKDLSLPVLVLGIESDGLFTFDE 410
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 572 PDHHGRCLLTLAPGLVGH 519
PD H R + ++AP + GH
Sbjct: 482 PDIHNRIIASMAPSIYGH 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,001
Number of Sequences: 5004
Number of extensions: 46869
Number of successful extensions: 174
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -