Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f08
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.10 |||mitochondrial intermembrane space protein sorting p...   111   8e-26
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    70   2e-13
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.4  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   1.8  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    27   2.4  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    25   5.5  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   7.2  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   7.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.2  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.2  

>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score =  111 bits (266), Expect = 8e-26
 Identities = 56/115 (48%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
 Frame = +3

Query: 183 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWF 359
           MKI+ S H F +P+E V+ A W+KYPN     VI  D ++RKV+D GVL+T RL++    
Sbjct: 1   MKIFESCHLFQYPFEQVSAAHWQKYPNEHATHVIAVDTLDRKVLDNGVLYTERLITCHQA 60

Query: 360 FPRWAQALIGTAKICYASEISXVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHP 524
            PRW   LI  A+ CY  E S V+   R +TL T+NLTF   + VDETV Y+PHP
Sbjct: 61  LPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHP 115


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
 Frame = +3

Query: 189 IWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVD-GVLHTHRLVSSKWFFP 365
           I T +   N  W TV+ A   +YPNP +  V+  DV+ER V D G L+T RL+  +   P
Sbjct: 4   ICTDKTELNASWNTVSSAWLTRYPNPYSLHVVSADVLERYVDDEGRLYTERLLVKQGRLP 63

Query: 366 RWAQALIGTAKICYASEISXVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKT 542
           RWA  L+   K  Y  E S ++P ++++  +T NL     + V E  R+     + SKT
Sbjct: 64  RWASDLLNVNK-SYILERSVIDPSKQELKSETFNLDHVKILRVIEYSRFIQSSENCSKT 121


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +3

Query: 216 HPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWFFPRWAQALIGTA 395
           H W+ +       YPN    AV   ++       G +H   L+ S+     WA A++G A
Sbjct: 431 HIWQAMLLYVTDAYPNVSASAVAAFELPSNLGAVGFIHLSALMFSR-MNVHWATAVVGFA 489

Query: 396 KI 401
            +
Sbjct: 490 SL 491


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = +3

Query: 135 RSLSLYCNLH*ILEKNMKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVV 314
           R +  Y N   +L K  KI  +  + + P    A    RKYP    P  IGTD    +  
Sbjct: 316 RKMCNYHNPSILLIKAKKINANHKSSSRPISLDATIP-RKYP----PHCIGTDKAVPQKF 370

Query: 315 DGVLHTHRLVSSKWFFPRWAQALIG 389
               H   ++   +   RW Q+ +G
Sbjct: 371 GADFHNENILLGAYISTRWRQSHMG 395


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 501 FHQQQCN-DRMLGLLFLKSSVAVLGLLXISH*HN 403
           FH  Q N D++L + FL   V ++G+L  +H HN
Sbjct: 443 FHPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHN 476


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 213 NHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTH 335
           +HP  T A       PNP+ P+ +  DV +   +D  ++ H
Sbjct: 165 SHPIPTPAIQRTSSIPNPLTPSYVVFDVAKPVPIDVNIYDH 205


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +3

Query: 303 RKVVDGVLHTHRLVSSKWFFPRWAQALIGTAKICYASEISXVNPIQRQMTLKTTN 467
           RK+++ +LH+H  +SS +F+   +   +  A +  +     +NP  R  +  ++N
Sbjct: 42  RKIINEMLHSHSELSS-FFYAEKSNTFLTIAGLAESELFDTLNPAFRISSCPSSN 95


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 186 KIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSK 353
           K ++ +H   HPW T +     K  N  +P  + + ++ +  +D  L   RL SS+
Sbjct: 259 KRYSVKHVVQHPWLTSSTPFRTKNGNCADPVALASRLMLKLRID--LDKPRLASSR 312


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +3

Query: 168 ILEKNMKIWTSEHTFNHPWETVAQAAWRKYPNP-MN-PAVIGTDVVERKVVDGVLHTHRL 341
           IL+ +   W  +H F+     + +  W KY NP +N P  +  D +       +   H L
Sbjct: 272 ILDVHTSYW--KHMFSLFGFQINENDW-KYANPNLNRPPFLHNDQISDDYFPEIFKRHFL 328

Query: 342 VSSKWFFP 365
              +W FP
Sbjct: 329 NRKRWLFP 336


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 440 ATDDFKNNKPN 472
           ATDDF +NKPN
Sbjct: 219 ATDDFSHNKPN 229


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 416  LTSITYFCSTN*RLGPSWKKPFGTD*SMSMKYTIYNFS 303
            L+ IT F S+   + P+WKK FG   + ++KY + + S
Sbjct: 1649 LSEITLFPSS---VSPTWKKSFGNA-NTNLKYGLEDMS 1682


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 416  LTSITYFCSTN*RLGPSWKKPFGTD*SMSMKYTIYNFS 303
            L+ IT F S+   + P+WKK FG   + ++KY + + S
Sbjct: 1649 LSEITLFPSS---VSPTWKKSFGNA-NTNLKYGLEDMS 1682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,252
Number of Sequences: 5004
Number of extensions: 46156
Number of successful extensions: 98
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)