Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f08
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical pr...   120   9e-28
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    28   5.0  

>Z81063-4|CAB02955.1|  209|Caenorhabditis elegans Hypothetical
           protein F15D3.6 protein.
          Length = 209

 Score =  120 bits (288), Expect = 9e-28
 Identities = 52/120 (43%), Positives = 79/120 (65%)
 Frame = +3

Query: 183 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWFF 362
           M+IW+SEH F+H WETVAQAA+RKYPNP+N ++ G DVV++ +  G + T R++ S +  
Sbjct: 1   MRIWSSEHIFDHEWETVAQAAFRKYPNPLNRSITGIDVVKQTLEAGKILTERIIQSHFSI 60

Query: 363 PRWAQALIGTAKICYASEISXVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSDSSKT 542
           P WA  L G +   Y+ E + ++P +++ +L T NL    ++ VDE + YTP   D +KT
Sbjct: 61  PSWATKLTGFSGTQYSHEYTVIDPTRKEFSLTTRNLNGSSFLRVDEKLTYTPAHEDPNKT 120


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
 Frame = +3

Query: 183 MKIWTSEHT-FNHPWETVAQAAWRKYPNPMNPAVIGTDVVERKVVDGVLHTHRLVSSKWF 359
           MK+W S +T F + ++ VA A W +YPN     +I  DV+ER++ D  + T +L+  +  
Sbjct: 1   MKLWDSPNTSFPYSFDEVASAFWDRYPNSHAKHIISEDVLERQITDNTIVTKKLIVKQGS 60

Query: 360 -----FPRWAQALIGTAKICYASEISXVNPIQRQMTLKTTNLTFCHYIAVDETVRY 512
                 PRW   +    ++    E S  + + +++   T N++      + E   Y
Sbjct: 61  SILKRVPRWISRMT-DIQVVPVIEESVYDKVSKKLVTYTRNVSHISLFQLHERCIY 115


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 254 FSPCCLSNCFPWMVECVF*CP 192
           F+ C L +C P+M ECV  CP
Sbjct: 63  FNECLLVHCLPYMEECV--CP 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,165
Number of Sequences: 27780
Number of extensions: 256155
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)