Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f07
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675...    27   4.9  
04_01_0138 - 1558877-1558981,1559030-1559737                           27   6.5  
06_03_0030 - 15687877-15688083,15688177-15688471,15688551-156887...    27   8.6  
02_05_1186 + 34816774-34817055,34817216-34817334,34818139-348186...    27   8.6  

>02_03_0187 -
           16166365-16166571,16166665-16166962,16167197-16167524,
           16167990-16168157,16168803-16168858,16168991-16169076,
           16169846-16169977
          Length = 424

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = -2

Query: 346 GHRIQRFSLYFYNESYK*R*IVFVWYDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKLF 167
           G  + R+ LYF  + Y  R    +  DT+ I  H+  TL    +   I H  + P  +  
Sbjct: 335 GFYVMRYMLYFVEDGYNHRNAEKLGLDTSEILPHVFKTL-TDEFCGFIRHYVIDPTGEYN 393

Query: 166 VT-V*KLTYKILADPADIVVPQLISKK 89
           +  V K        P D    +L  +K
Sbjct: 394 INKVPKRVQSSAPPPRDQAATKLAPRK 420


>04_01_0138 - 1558877-1558981,1559030-1559737
          Length = 270

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 96  LIN*GTTMSAGSASILYVNFQTVTNNF 176
           LIN GTT + GS   + V F T  N F
Sbjct: 146 LINNGTTTAFGSDRFIAVEFDTYNNTF 172


>06_03_0030 -
           15687877-15688083,15688177-15688471,15688551-15688721,
           15688968-15689026
          Length = 243

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -2

Query: 346 GHRIQRFSLYFYNESYK*R*IVFVWYDTTRIYMHLRNTLIAISYSNVILHNTVLP 182
           G  + R+ LYF  + Y  R    +  DT+ I  H+   L    +   I H+ V P
Sbjct: 154 GFYVMRYMLYFVEDGYNHRNAEKLGLDTSEILPHVFKAL-TDEFCGFICHHVVDP 207


>02_05_1186 +
           34816774-34817055,34817216-34817334,34818139-34818664,
           34818760-34818977,34819639-34819966
          Length = 490

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 257 PCRIVPNKNNSASFITFVI 313
           PC+++P   N A++I FV+
Sbjct: 402 PCKMLPGNTNYAAYIVFVV 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,550,169
Number of Sequences: 37544
Number of extensions: 163283
Number of successful extensions: 249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)