Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28f07
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 29 1.9
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 29 1.9
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 29 1.9
AF038608-4|AAU05594.2| 310|Caenorhabditis elegans Serpentine re... 28 3.3
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad... 27 4.4
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 5.8
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = -2
Query: 328 FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 170
FS++++ + Y+ + +++ D+ + ++R ++ + S+SNV N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = -2
Query: 328 FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 170
FS++++ + Y+ + +++ D+ + ++R ++ + S+SNV N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = -2
Query: 328 FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 170
FS++++ + Y+ + +++ D+ + ++R ++ + S+SNV N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = -2
Query: 328 FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 170
FS++++ + Y+ + +++ D+ + ++R ++ + S+SNV N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = -2
Query: 328 FSLYFYNESYK*R*IVFVW------YDTTRIYMHLRNTLIAISYSNVILHNTVLPNEKL 170
FS++++ + Y+ + +++ D+ + ++R ++ + S+SNV N V PNE++
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEEI 212
>AF038608-4|AAU05594.2| 310|Caenorhabditis elegans Serpentine
receptor, class z protein37 protein.
Length = 310
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 70 FYTKV*VFYLSIEALRCLPGQLVFYTLIFKLLQIIFHLATLCCVGSHYY 216
FY K F S L CL +FY +FK + + L + SH+Y
Sbjct: 10 FYFKQFDFEYSYPGLACLFSFYLFYVYVFKENRKVDEKTALFPITSHFY 58
>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform a protein.
Length = 1251
Score = 27.5 bits (58), Expect = 4.4
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = -2
Query: 274 WYDTTRIYMHLRNTLIA-ISYSNVILHNTVLPNEKLFVTV*KLTYKILADPADIV-VPQL 101
++D T + M N + ++ SN+ L FVT L + AD +++ +
Sbjct: 102 FHDETDVLMLTTNLIRKDVNSSNMYESGIALGGLSCFVTP-DLARDLAADVVNLLSCSRN 160
Query: 100 ISKKP--ILLYKINLKQSKGIRPTGDTSKEK 14
++K +LLYKI LK +RPT KEK
Sbjct: 161 YTRKRAVLLLYKIFLKYPDALRPTFPRLKEK 191
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 1 NNNFVFLLMCPPSDGFLLIVLSL 69
N++F+ LL+CPPS F +L L
Sbjct: 1644 NSDFIPLLVCPPSQEFYEFLLRL 1666
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 1 NNNFVFLLMCPPSDGFLLIVLSL 69
N++F+ LL+CPPS F +L L
Sbjct: 1644 NSDFIPLLVCPPSQEFYEFLLRL 1666
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,255,124
Number of Sequences: 27780
Number of extensions: 180458
Number of successful extensions: 370
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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