Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28f05
(514 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 306 5e-84
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 306 5e-84
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 304 2e-83
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 246 7e-66
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 190 4e-49
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 190 4e-49
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 173 5e-44
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 85 3e-17
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 85 3e-17
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 85 4e-17
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 85 4e-17
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 85 4e-17
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 56 1e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 1e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 54 5e-08
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 45 3e-05
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 2e-04
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 39 0.002
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 38 0.003
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 34 0.052
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.052
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.052
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 34 0.052
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 31 0.64
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.64
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.1
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 1.1
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.5
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.5
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 2.6
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 4.5
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 306 bits (752), Expect = 5e-84
Identities = 144/150 (96%), Positives = 147/150 (98%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 241
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 242 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 421
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 422 GEFEAGISKNGQTREHALLAFTLGVKQLIV 511
GEFEAGISKNGQTREHALLA TLGVKQLIV
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIV 150
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 306 bits (752), Expect = 5e-84
Identities = 144/150 (96%), Positives = 147/150 (98%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 241
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 242 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 421
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 422 GEFEAGISKNGQTREHALLAFTLGVKQLIV 511
GEFEAGISKNGQTREHALLA TLGVKQLIV
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIV 150
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 304 bits (747), Expect = 2e-83
Identities = 142/149 (95%), Positives = 146/149 (97%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 241
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 242 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 421
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 422 GEFEAGISKNGQTREHALLAFTLGVKQLI 508
GEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 246 bits (602), Expect = 7e-66
Identities = 113/117 (96%), Positives = 116/117 (99%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 241
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 242 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 412
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 190 bits (464), Expect = 4e-49
Identities = 88/147 (59%), Positives = 110/147 (74%)
Frame = +2
Query: 71 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 250
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 251 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 430
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 431 EAGISKNGQTREHALLAFTLGVKQLIV 511
E G GQT+EHALL +LGV QLIV
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIV 313
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 190 bits (464), Expect = 4e-49
Identities = 88/147 (59%), Positives = 110/147 (74%)
Frame = +2
Query: 71 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 250
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 251 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 430
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 431 EAGISKNGQTREHALLAFTLGVKQLIV 511
E G GQT+EHALL +LGV QLIV
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIV 331
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 173 bits (422), Expect = 5e-44
Identities = 76/149 (51%), Positives = 107/149 (71%)
Frame = +2
Query: 65 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 244
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 245 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 424
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 425 EFEAGISKNGQTREHALLAFTLGVKQLIV 511
EFE G + GQTREH++L T GVK L++
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVI 252
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 241
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 242 DKLKAER 262
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 85.0 bits (201), Expect = 3e-17
Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 74 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 247
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 248 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 427
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 428 FEAGISKNGQTREHALLAFTLGVKQLIV 511
E QT+EH +LA +GVK + +
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAI 166
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 85.0 bits (201), Expect = 3e-17
Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 74 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 247
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 248 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 427
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 428 FEAGISKNGQTREHALLAFTLGVKQLIV 511
E QT+EH +LA +GVK + +
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAI 166
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 84.6 bits (200), Expect = 4e-17
Identities = 54/143 (37%), Positives = 74/143 (51%)
Frame = +2
Query: 68 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 247
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 248 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 427
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 428 FEAGISKNGQTREHALLAFTLGV 496
QTREH LLA +GV
Sbjct: 150 MP-------QTREHLLLARQVGV 165
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 84.6 bits (200), Expect = 4e-17
Identities = 54/143 (37%), Positives = 74/143 (51%)
Frame = +2
Query: 68 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 247
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 248 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 427
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 428 FEAGISKNGQTREHALLAFTLGV 496
QTREH LLA +GV
Sbjct: 151 MP-------QTREHLLLARQVGV 166
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 84.6 bits (200), Expect = 4e-17
Identities = 54/143 (37%), Positives = 74/143 (51%)
Frame = +2
Query: 68 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 247
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 248 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 427
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 428 FEAGISKNGQTREHALLAFTLGV 496
QTREH LLA +GV
Sbjct: 151 MP-------QTREHLLLARQVGV 166
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 56.4 bits (130), Expect = 1e-08
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 266 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 424
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 56.0 bits (129), Expect = 1e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 266 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 424
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 54.4 bits (125), Expect = 5e-08
Identities = 38/113 (33%), Positives = 53/113 (46%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 266 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 424
RGITI A + + IID PGH DF + D AVL++ G G
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 45.2 bits (102), Expect = 3e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 214
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 215 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 382
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 383 QADCAVLIVAAGTG 424
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 44.8 bits (101), Expect = 4e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +2
Query: 62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 214
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 215 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 382
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 383 QADCAVLIVAAGTG 424
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 38.3 bits (85), Expect(2) = 2e-04
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 209 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQ 385
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 386 ADCAVLIVAAGTG 424
AD VL+VAA G
Sbjct: 228 ADIVVLVVAADDG 240
Score = 23.0 bits (47), Expect(2) = 2e-04
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 89 IVVIGHVDSGKST 127
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 68 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 244
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 245 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 409
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 68 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 244
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 245 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 409
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.3 bits (85), Expect = 0.003
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 11/169 (6%)
Frame = +2
Query: 38 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 208
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 209 GKGSFKYAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 370
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTI 244
Query: 371 TGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 511
G + D +L++ A G G T+EH LA +L V +V
Sbjct: 245 FGMTGHMPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV 286
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 34.3 bits (75), Expect = 0.052
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 1/144 (0%)
Frame = +2
Query: 83 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 262
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 263 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 439
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 440 ISKNGQTREHALLAFTLGVKQLIV 511
I QT EH LLA ++I+
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVII 130
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 34.3 bits (75), Expect = 0.052
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 266 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 424
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 34.3 bits (75), Expect = 0.052
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 86 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 266 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 424
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 34.3 bits (75), Expect = 0.052
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 12/170 (7%)
Frame = +2
Query: 38 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 208
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 209 GKGSFKYAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 370
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTI 244
Query: 371 TGTSQ---ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 511
G + + +L++ A G G T+EH LA +L V +V
Sbjct: 245 FGMHRPYARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV 287
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 30.7 bits (66), Expect = 0.64
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 8/167 (4%)
Frame = +2
Query: 35 QFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEM 208
+ ++R P+ ++ + + V+G D GKST G L C G K I F + E+
Sbjct: 154 EVLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEV 211
Query: 209 GKGSFKYAWVLDKLKAERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITG 376
G K + V + + RG ++ A E S VT+ID G + K I G
Sbjct: 212 RTG--KTSSVCNDVIGFDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHG 269
Query: 377 TS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 511
+ A L+VAA + GI+ TREH L L + ++
Sbjct: 270 LTGYTPHFACLVVAA-----DRGIT--WATREHLGLIAALNIPMFVL 309
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 317 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 412
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 326 IIDAPGHRDFIKNMITGTSQADCAVLIV 409
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 513 PTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 394
PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 16 PTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 164 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 164 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 265
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 83 INIVVIGHVDSGKSTTT 133
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.7 bits (61), Expect = 2.6
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -1
Query: 505 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 347
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 346 VSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSI 227
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 320 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 415
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,154,907
Number of Sequences: 27780
Number of extensions: 222778
Number of successful extensions: 673
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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