Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f01
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   4.1  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    26   5.5  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   5.5  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           26   5.5  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    26   5.5  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   7.2  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   9.5  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   9.5  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 165 SISKEFRDELKLSMPTPIT-VPGGSKEI-PEGTEEVTKESSRPGSPMPEPGTL 317
           S+SK   D   +S+P P+T  P  S  + P    +V +  + P   +P P  L
Sbjct: 522 SVSKNIADGAVISIPKPLTPKPSDSNSLYPLPHSKVGRRKNIPAITVPPPSIL 574


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 78  PYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELK 197
           P  +R R  ENI    ++K+VY  ++      +E + ELK
Sbjct: 40  PEKKRLRLSENIPATIESKRVYDETIIEDKPDEELQAELK 79


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 394 HSTSYLISKIPRLQIFYFKLLKYQTQD 474
           H TS ++S+ PRL+I YF      T D
Sbjct: 569 HPTSGIVSRHPRLRIAYFAQHHVDTLD 595


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 60  PVKVPQPYSRRRRSKENILKDTQTKQVYMHSL 155
           PV V +P  +R RSK   LKD +T++ YM  L
Sbjct: 272 PVIVVRPDRKRVRSKNKRLKD-KTRKSYMEIL 302


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 84  SRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEI 245
           +R    +E + K+   K+    S   ++  K  +     S+P P+ VPG +K I
Sbjct: 7   TRSSTKREEVSKNGVEKRELDESDVMKNGKKPVKRAKVSSLPKPVRVPGSAKRI 60


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/93 (16%), Positives = 39/93 (41%)
 Frame = +3

Query: 3   LPKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEF 182
           +P    L K   + E + E   + +       S + + +    K V  ++  + +++K+ 
Sbjct: 563 VPPSNRLKKHVSTPEKIVEERSIDEVSQSNTPSSKQLPQSVDGKTVTANA-NSTTVAKQP 621

Query: 183 RDELKLSMPTPITVPGGSKEIPEGTEEVTKESS 281
              + L+ P P+       +IP+  + +  +S+
Sbjct: 622 TSNVALTRPKPVRTATSQSKIPKPVKHIPSDSN 654


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 427 RLQIFYFKLLKYQTQDP--*SIYKLI 498
           RLQ  Y +L+KY  +DP   +IYKL+
Sbjct: 448 RLQAEYGQLMKYAPEDPFKHAIYKLL 473


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 60  PVKVPQPYSRRRRSKENILKD 122
           P  VP  ++ +R+  EN+LKD
Sbjct: 610 PAGVPFEFTHKRKDDENLLKD 630


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/48 (20%), Positives = 25/48 (52%)
 Frame = +3

Query: 150 SLTARSISKEFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGS 293
           S+ + + S E+RD++  +  +        KE+P+ +E+ + ++    S
Sbjct: 205 SIDSSNPSAEYRDDINNTFGSQTVSSANGKEVPQTSEDSSSQAPHHSS 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,958
Number of Sequences: 5004
Number of extensions: 52508
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)