Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28f01
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 30 1.9
11_04_0329 - 16442298-16443734 29 4.3
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 29 4.3
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 29 4.3
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 5.6
03_05_0567 - 25672780-25672965,25673043-25673135,25673237-256732... 28 5.6
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 28 7.5
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540... 28 7.5
02_02_0129 + 7055896-7056135,7056404-7056771,7056816-7056928,705... 28 7.5
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/100 (24%), Positives = 44/100 (44%)
Frame = +3
Query: 6 PKVKELAKKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFR 185
P + +L K+ + +E L EP P P RR ++ N + TA +E +
Sbjct: 14 PSLLDLQKRTLRLEKLQEPPPPPPPPQPRRSTRRNPAGVDSGDEG-----TAPGGRREKK 68
Query: 186 DELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPE 305
L + +P +++ +G+EE S P +P+P+
Sbjct: 69 LRLVMGLPDGSAKGEKTRKATDGSEE--PSDSGPTTPLPD 106
>11_04_0329 - 16442298-16443734
Length = 478
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -1
Query: 241 SLEPPGTVIGVGIDNLSSSRNSFEMLLAVRLCIYTCFVCVSFKIFSLLRRRRE*GCGTLT 62
+L PPG V+ + + +L + NSF + + +R + + + FSLLRR G G+ +
Sbjct: 63 ALSPPGAVLRL-LASLPCAPNSFMLNITLRALASSPDPASALRFFSLLRRGSGGGGGSYS 121
Query: 61 -GSLRFSML 38
G F+ L
Sbjct: 122 PGRHTFTFL 130
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 207 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPG 311
P P++VPGG G E ++ P P P PG
Sbjct: 22 PAPLSVPGGRAAFLSGAAEEVAQADAP--PPPPPG 54
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 207 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 326
P P P GS + G E+ +E S P P P P + K
Sbjct: 26 PEPTVAPEGSSDSDVGDED--EEYSSPSDPCPSPSPKRRK 63
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 207 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 326
P P P GS + G E+ +E S P P P P + K
Sbjct: 26 PEPTVPPEGSSDSDVGDED--EECSSPSDPCPSPSPKRRK 63
>03_05_0567 -
25672780-25672965,25673043-25673135,25673237-25673297,
25673385-25673495,25673640-25673825,25673909-25675287,
25675393-25675776,25675813-25676061,25676147-25676386
Length = 962
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 207 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 326
P P P GS + G E+ +E S P P P P + K
Sbjct: 26 PEPTVPPDGSSDSDVGDED--EEYSSPSDPCPSPSPKRRK 63
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 207 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 326
P P P GS + G E+ +E S P P P P + K
Sbjct: 26 PEPTVPPDGSSDNDVGDED--EEYSSPSDPCPSPSPKRRK 63
>03_05_0704 -
26953474-26953643,26953770-26953801,26953915-26954009,
26954107-26954180,26954283-26954412,26954522-26954585,
26954660-26954722,26954795-26954937,26955386-26955523,
26955610-26955731,26955805-26955976,26956559-26956630,
26956753-26956887,26956987-26957103,26957184-26957316,
26957455-26957561,26958060-26958077,26958235-26958379,
26958472-26958671,26960744-26961421
Length = 935
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 177 EFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEP 308
E + ++ +S P G S +GT+ V +E S+ +P P P
Sbjct: 135 EMKGKMVVSGGAPPAGQGSSLAAAQGTDNVKREPSQVAAPAPAP 178
>02_02_0129 +
7055896-7056135,7056404-7056771,7056816-7056928,
7057014-7057118,7057283-7057860,7057889-7058346,
7058430-7058681,7058762-7058872,7058960-7059020,
7059122-7059214,7059292-7059477
Length = 854
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 207 PTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEPGTLKNK 326
P P+ P GS G E+ +E S P P P P + K
Sbjct: 26 PEPMVPPEGSSNSDVGDED--EEYSSPSDPCPSPSPKRRK 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,346,673
Number of Sequences: 37544
Number of extensions: 329804
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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