Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f01
         (655 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    25   2.8  
Y13592-1|CAA73920.1|  136|Anopheles gambiae voltage-gated sodium...    23   6.4  
AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.          23   6.4  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   6.4  

>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 439 IFVDVGFYLLNNLYYDRINT 380
           I +D G+++ N +++D I T
Sbjct: 314 IILDAGYFMPNRMFFDNIGT 333


>Y13592-1|CAA73920.1|  136|Anopheles gambiae voltage-gated sodium
           channel protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 439 IFVDVGFYLLNNLYYDRINTAPDH 368
           IF  +G  L    Y D ++  PDH
Sbjct: 28  IFAVMGMQLFGKNYVDNVDRFPDH 51


>AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 FVTNLNCLCQLRSLYQEAPKRSQKEP 258
           FV ++  + + RSLYQ A +  QK P
Sbjct: 212 FVRDIPSVEERRSLYQLAQREVQKRP 237


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 439  IFVDVGFYLLNNLYYDRINTAPDH 368
            IF  +G  L    Y D ++  PDH
Sbjct: 943  IFAVMGMQLFGKNYVDNVDRFPDH 966


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,495
Number of Sequences: 2352
Number of extensions: 12564
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)