Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28f01
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23515-4|AAU87816.1| 333|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 30 1.6
Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical ... 29 3.8
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 29 3.8
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 29 3.8
U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical pr... 28 5.0
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 28 5.0
Z54271-8|CAA91038.1| 185|Caenorhabditis elegans Hypothetical pr... 28 6.7
U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical pr... 27 8.8
U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical pr... 27 8.8
>U23515-4|AAU87816.1| 333|Caenorhabditis elegans Hypothetical
protein R144.12 protein.
Length = 333
Score = 31.1 bits (67), Expect = 0.71
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -3
Query: 242 LFGASWYSDRSWHRQFKFVTKL 177
L GA+WY+++ WH ++++T +
Sbjct: 232 LLGAAWYANKQWHLLYRYLTDI 253
>Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical
protein R04F11.3 protein.
Length = 385
Score = 30.7 bits (66), Expect = 0.94
Identities = 20/87 (22%), Positives = 38/87 (43%)
Frame = +3
Query: 66 KVPQPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEI 245
K+P+ +++S + +K + K S S + E K S P G
Sbjct: 125 KLPEQLKPQKKSDSSNVKVEKEKSTEQKPTIEPSTSSKSAIETKKSSIAPPKKQGTLSMF 184
Query: 246 PEGTEEVTKESSRPGSPMPEPGTLKNK 326
+ TE+ T+++ + SP+P+ KN+
Sbjct: 185 SKKTEKKTEKTEKSQSPVPQDQEKKNR 211
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +3
Query: 27 KKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQV----YMHSLTARSISKEFRDEL 194
++F S+ NL + +PY + N+ K QV + +TA S + +
Sbjct: 103 EEFQSITNLKNFSSLVKPYILKVNPGTNVTKMYPLFQVKYKEFQDHMTAHGKSIQKQQRA 162
Query: 195 KLSMPTPITVPGGSKEIPEGTEEVTKESSRPGS 293
K +P P+ V K IP+ T + R GS
Sbjct: 163 KF-VPVPVPVTPQEKIIPQKTRSSARRKRRDGS 194
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +3
Query: 27 KKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQV----YMHSLTARSISKEFRDEL 194
++F S+ NL + +PY + N+ K QV + +TA S + +
Sbjct: 103 EEFQSITNLKNFSSLVKPYILKVNPGTNVTKMYPLFQVKYKEFQDHMTAHGKSIQKQQRA 162
Query: 195 KLSMPTPITVPGGSKEIPEGTEEVTKESSRPGS 293
K +P P+ V K IP+ T + R GS
Sbjct: 163 KF-VPVPVPVTPQEKIIPQKTRSSARRKRRDGS 194
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +3
Query: 27 KKFVSMENLSEPVKVPQPYSRRRRSKENILKDTQTKQV----YMHSLTARSISKEFRDEL 194
++F S+ NL + +PY + N+ K QV + +TA S + +
Sbjct: 103 EEFQSITNLKNFSSLVKPYILKVNPGTNVTKMYPLFQVKYKEFQDHMTAHGKSIQKQQRA 162
Query: 195 KLSMPTPITVPGGSKEIPEGTEEVTKESSRPGS 293
K +P P+ V K IP+ T + R GS
Sbjct: 163 KF-VPVPVPVTPQEKIIPQKTRSSARRKRRDGS 194
>Z81504-1|CAB04116.1| 426|Caenorhabditis elegans Hypothetical
protein F15H9.1 protein.
Length = 426
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 132 KQVYMHSLTARSISKEFRD---ELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMP 302
K+ ++H + +I K F + + + TPI PG S +PE ++ +E S +P
Sbjct: 141 KKAWLHGICKNNIKKLFSSIHTPMLVEVETPI--PGSSVCVPEKKTQILEEPSFVYMFIP 198
Query: 303 EPGTLKNKL 329
G++ KL
Sbjct: 199 SNGSVVEKL 207
>AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical
protein B0041.2c protein.
Length = 395
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 301 GIGLPGLLD--SLVTSSVPSGISLEPPGTVIGVGIDNLSSS 185
G G G+LD SL +++V G S+ PP +GVG SSS
Sbjct: 142 GYGDNGVLDGGSLWSAAVMDGSSMVPPHPTMGVGSSASSSS 182
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 301 GIGLPGLLD--SLVTSSVPSGISLEPPGTVIGVGIDNLSSS 185
G G G+LD SL +++V G S+ PP +GVG SSS
Sbjct: 371 GYGDNGVLDGGSLWSAAVMDGSSMVPPHPTMGVGSSASSSS 411
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 301 GIGLPGLLD--SLVTSSVPSGISLEPPGTVIGVGIDNLSSS 185
G G G+LD SL +++V G S+ PP +GVG SSS
Sbjct: 453 GYGDNGVLDGGSLWSAAVMDGSSMVPPHPTMGVGSSASSSS 493
>U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical
protein C29H12.6 protein.
Length = 316
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = +3
Query: 75 QPYSRRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEIPEG 254
QP RR+ S +++ + + + S+ + RDELK +P I P +P
Sbjct: 30 QPDERRKASSPSVVPMSSKRIAQPMRAASHSVVRHSRDELK-PLPVSIAFPPPPTSMPPP 88
Query: 255 TEEVTKESSRPGS 293
T S+ GS
Sbjct: 89 MITSTSSSTCNGS 101
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Frame = +3
Query: 87 RRRRSKENILKDTQTKQVYMHSLTARSISKEFRDELKLSMPTPITVPGGSKEIPEGTEE- 263
+ RR+ +++ T T + R++ +F S P P+ PG P G++E
Sbjct: 151 QHRRASTPLVRTTPTPPSTLAPRDLRALPLDFPIPANFSQPPPVIPPGYFFNAPTGSQEH 210
Query: 264 ------VTKESSRP----GSPMPE 305
+E++RP G PMP+
Sbjct: 211 HQHYAPQPQENARPITPHGYPMPQ 234
>Z54271-8|CAA91038.1| 185|Caenorhabditis elegans Hypothetical
protein F21D5.9 protein.
Length = 185
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 174 KEFRDELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSP-MPEPGTLKNKL 329
++F L + P PITVP + P T + SS S + P T+ N L
Sbjct: 84 RQFISTLCHASPAPITVPLPRVQQPRATTSTSSSSSTSSSSGVTVPSTMNNPL 136
>U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical
protein W05H7.4e protein.
Length = 666
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 186 DELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEP 308
D + +PTP+T P SK P E+ T GS P
Sbjct: 27 DSPAVYVPTPLTAPSTSKTTPVKPEDQTTRQKYGGSVSYSP 67
>U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical
protein W05H7.4b protein.
Length = 663
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 186 DELKLSMPTPITVPGGSKEIPEGTEEVTKESSRPGSPMPEP 308
D + +PTP+T P SK P E+ T GS P
Sbjct: 27 DSPAVYVPTPLTAPSTSKTTPVKPEDQTTRQKYGGSVSYSP 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,953
Number of Sequences: 27780
Number of extensions: 305185
Number of successful extensions: 850
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -