Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28f01
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 216 ITVPGGSKEIPEGTEEVTKESSRPGSP--MPEPGTLKNK 326
           +TVP     IP     ++ +++R GSP   P P   +NK
Sbjct: 81  VTVPRWRNGIPATLTYISLDTNRGGSPKLTPYPNWAQNK 119


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 228 GGSKEIPEGTEEVTKESSRPGSPMPEPGTLK 320
           G + ++P+ T+ V ++S + G P  +P  L+
Sbjct: 29  GAAVQVPQQTQSVQQQSQQAGDPC-DPSLLR 58


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 478 MDPEFDILKV*NKIFVDVGFYLLNNLYYDRINTAPD 371
           +DP+  IL   +    +VGFY +  + YD I T  D
Sbjct: 239 VDPKGSILDPSSDSQNEVGFYEVEGIGYDFIPTVLD 274


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 264 VTKESSRPGSPMPEPGTLKNKLAFFESL 347
           +T  SS P SP+P P  L   +   E+L
Sbjct: 435 LTPPSSNPVSPVPSPDPLDLAIPVRETL 462


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 102 KENILKDTQTKQVYMHSLTAR-SISKEFRDELKLSMPTPITVPGGSKEIPEGTE 260
           K   +  T T    + SL +   I+     EL +S   PIT  GG  ++ E  E
Sbjct: 404 KSEYVDITVTTDASVPSLVSNVRITSVKSSELSISWDAPITEIGGDSDLVERYE 457


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 63  VKVPQPYSRRRRSK 104
           V  P  YSRRRRSK
Sbjct: 140 VTQPLIYSRRRRSK 153


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 186 HETPLKCSWLLDYAYTLAL 130
           H+T     W++D+A TL L
Sbjct: 488 HDTKNAGIWMIDFAKTLPL 506


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 186 HETPLKCSWLLDYAYTLAL 130
           H+T     W++D+A TL L
Sbjct: 403 HDTKNAGIWMIDFAKTLPL 421


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 186 HETPLKCSWLLDYAYTLAL 130
           H+T     W++D+A TL L
Sbjct: 722 HDTKNAGIWMIDFAKTLPL 740


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,668
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)