Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28e23
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 28 0.74
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 26 2.3
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 4.0
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 5.2
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 25 6.9
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 24 9.1
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 24 9.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 24 9.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 9.1
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 9.1
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 24 9.1
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.9 bits (59), Expect = 0.74
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 77 NSYILFCNKMAQELPIKVKESIQKIIQRENFVSHDVETKK 196
NSY L PI + E+I+KI+++ F TK+
Sbjct: 813 NSYFLLPTVSRHYRPITIFEAIRKILKKREFAKKPTMTKR 852
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -3
Query: 434 ISRFQVFQLRFEDLR-KPDRALYKPMLLLQRYLRP 333
+SRF + + +D+ K DRAL + +L + RYL P
Sbjct: 487 LSRFDLLFIVTDDIDDKKDRALSEHVLRMHRYLPP 521
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 62 VKLSGNSYILFCNKMAQELPIKVKESIQKIIQRENFVSHDVETKKIYPD 208
VK NS++L+ E+P +SI +II + + + + KK Y D
Sbjct: 16 VKRPLNSFMLYRRDRQAEIPTSNHQSISRII-GQLWRNESAQVKKYYSD 63
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +2
Query: 137 SIQKIIQRENFVSH-----DVETKKIYPDGSGFMGDLYVVD 244
SI K+ + E+ SH ++Y DG GF+G + D
Sbjct: 431 SISKLQEHESSCSHVERLFGFAPNRLYDDGDGFLGSSFCSD 471
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 425 FQVFQLRFEDLRKPDRALYKPMLLLQRYLRPNK 327
+Q+F + + L D LY P+L L Y+ P+K
Sbjct: 63 YQIFYVTLDPL---DGLLYSPVLYLFSYILPSK 92
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 24.2 bits (50), Expect = 9.1
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3
Query: 186 KQRKYIQMDLDLWAT 230
K R+YI D+++WA+
Sbjct: 12 KNRRYINKDIEIWAS 26
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 354 EKHWLIESSVRFSKIFKSKLEYLKTRDLK 440
++H+ +++ V+ SK KSKL + + LK
Sbjct: 84 DRHFALQTDVKLSKKRKSKLVEMTPKGLK 112
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 307 VYNLLNKQTHFFAAVF 260
V+N+LNK T FF A F
Sbjct: 67 VWNVLNKGTRFFKAEF 82
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 430 LVFRYSSFDLKIFENRTELSISQCFSCKD 344
L+FR S +DL + ++ + S+S S KD
Sbjct: 1545 LLFRISVYDLLLLQSIAQASVSVISSYKD 1573
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 9.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 342 SSTE*ILIRSALCIICLTNKLISLRPSFVVPLTSTTYKSPINPDPSGY 199
S E I+ + L + + +LISL PS ++ L +NPD Y
Sbjct: 621 SCLERIIDQEPLISLTIAKRLISLVPSLLLKLDFAVGWIHLNPDQVVY 668
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 24.2 bits (50), Expect = 9.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = -1
Query: 367 SQCF-SCKDIFDRINTYTFCIVYNL-------LNKQTHFFAAVFCCSSDIYNI 233
S C SC I+ +N Y C + N LN Q FF + +S++Y+I
Sbjct: 86 SMCLRSCTIIYFSMNPYMLCEILNARNVISCSLNTQKFFF--IIVAASNVYSI 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,830
Number of Sequences: 5004
Number of extensions: 39395
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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