Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28e23
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0207 - 41993659-41994849 31 0.31
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 31 0.55
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 29 1.3
06_03_0651 - 23164377-23165969 29 2.2
07_03_0361 + 17215312-17216217 28 3.9
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376 27 5.1
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 27 6.8
10_08_0675 - 19808197-19808354,19809023-19809374 27 9.0
07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630 27 9.0
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 27 9.0
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 27 9.0
>01_07_0207 - 41993659-41994849
Length = 396
Score = 31.5 bits (68), Expect = 0.31
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 230 LYVVDVRGTTKDGRKEMSLFVKQIIHNAE---RISIYSVEDIFAREALAYRELCPVFEDL 400
+Y +D G ++ +E + F+ +H A I IY+ +D++AR AL D
Sbjct: 7 VYELDHGGEGEEEEEEDACFLDIYVHGARGIHNICIYAAQDVYARLALTSSPDDAPALDT 66
Query: 401 QIEAGIPENERF 436
++ AG N RF
Sbjct: 67 RVAAGGGANPRF 78
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 30.7 bits (66), Expect = 0.55
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 245 VRGTTKDGRKEMSLFVKQIIHNAERISIY-SVEDIFAREALAYRELCPVFEDLQIEAGI 418
+RG D K++ Q+ ++ +SI S ED R+ +E +EDLQIEAG+
Sbjct: 421 LRGLLADNMKDVKELSSQLSEASKEMSIQLSSEDDLLRQIAKIKE---EYEDLQIEAGV 476
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +2
Query: 128 VKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIH 307
+ SI + Q S D+E K YP+ S + D V+ V G+ K + ++L++ +I
Sbjct: 1017 ISASIDMMKQDSAPTSLDIEVWKPYPENSLYNYDKDVLGVSGSGKVLEETVALWLLSLIC 1076
Query: 308 NAERISIYSVEDIFAREALA 367
++ S +V D+ E ++
Sbjct: 1077 SSHLSSKLTVMDLGGVETIS 1096
>06_03_0651 - 23164377-23165969
Length = 530
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 179 DVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIHNAERISIYS 334
D++ K+ PDG F+G L G +GRK+ ++++ R+ YS
Sbjct: 372 DMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHA-MREVYQIEPRVEHYS 422
>07_03_0361 + 17215312-17216217
Length = 301
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 107 AQELPIKVKESIQKIIQRENFVSHDVETKKIYP---DGSGFMGDLYVVDVRGTTKDGRKE 277
A+EL ++ + ++++ E SH V + +IYP + S GD+ + V G D +E
Sbjct: 80 AEELDGALRAAKERLVVVEFAASHSVNSSRIYPCMVELSRTCGDVDFLLVMGDESDATRE 139
Query: 278 M 280
+
Sbjct: 140 L 140
>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
Length = 798
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 170 VSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEM-SLFVKQIIH-NAERISIYSVED 343
+ HD+ + PDG ++G L G K+GR+ S+ V I AE S + D
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYS--CMVD 478
Query: 344 IFAREALAYRELCPVFEDLQIE 409
+ R L E + +++ +E
Sbjct: 479 LLGRSGLV-EEAFDLIKNMPVE 499
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 249 LTSTTYKSPINPDPSGYIFFVSTS*DTKFSL 157
+T T +KSP +P PS + + TS D + L
Sbjct: 174 MTLTAWKSPSDPSPSSVVVAMDTSGDPEVFL 204
>10_08_0675 - 19808197-19808354,19809023-19809374
Length = 169
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 137 SIQKIIQRENFVSHDVETKKIYPDGSGF 220
SI KI + +N +SH++ K D SGF
Sbjct: 74 SITKIQREQNLISHELANKARRDDYSGF 101
>07_01_0319 + 2245724-2245753,2246797-2246976,2247547-2247630
Length = 97
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 445 YHFKSLVFRYSSFDLKIFEN-RTELSISQCFSCKDI 341
YH S+V YS +++IF++ + L +S F K +
Sbjct: 5 YHENSIVIEYSDVNMEIFQSIQKHLQVSMEFVMKSV 40
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 26.6 bits (56), Expect = 9.0
Identities = 26/112 (23%), Positives = 47/112 (41%)
Frame = +2
Query: 98 NKMAQELPIKVKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKE 277
N+M +++ K ++ ++ Q + V+ E P GSG T + R+
Sbjct: 172 NRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAAQTGRRDRRR 231
Query: 278 MSLFVKQIIHNAERISIYSVEDIFAREALAYRELCPVFEDLQIEAGIPENER 433
K+ +H+ + + +VE + A R+ P D + EAG P ER
Sbjct: 232 K----KRSVHSGDEGHVLAVEGV----PRATRKGRPA-SDKKKEAGTPSRER 274
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 101 KMAQELPIKVKESIQKIIQRENFVSHDVETKKI 199
K Q++PI + + K ++ + F++H+V K I
Sbjct: 253 KPKQDIPILADKYLNKELELDKFITHEVPLKDI 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,758,928
Number of Sequences: 37544
Number of extensions: 204447
Number of successful extensions: 522
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -