Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e23
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    31   0.28 
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    31   0.28 
AF025457-4|AAB70966.1|  385|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    29   1.5  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    27   4.6  
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot...    27   4.6  
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele...    27   4.6  
Z77135-1|CAB00876.1|  362|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF016439-2|AAB65897.1|  176|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL161712-4|CAC35907.1|  175|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
 Frame = +2

Query: 140 IQKIIQR-ENFVSHD---VETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFV-KQII 304
           IQK+++  ++ ++ D   ++TK+   +GS     LY V  +GT  D R  M L + K  +
Sbjct: 123 IQKLLEEGKDEMAQDAALLQTKEKQDNGSEASW-LYSVISKGTATDKRTAMQLQMHKSPV 181

Query: 305 HNAERIS--IYSVEDIFAREALAYRELCPVFEDLQIEAGIPENER 433
           H+ E I   I S +    R+ +   ++ P+ ED+ I   +PEN +
Sbjct: 182 HSLEYIEKLIASCKKQGTRDVV---DIIPILEDVFINHCLPENRK 223


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 346 DIFDRINTYTFCIVYNLLNKQTHFFAAVFCCSSDIYNI*VAHK 218
           + FD INT ++ + Y  L+ Q H     F C+  I+   VA K
Sbjct: 272 EFFDLINTISYIVHYISLDAQAHVITWYFYCTHPIFKKKVARK 314


>AF025457-4|AAB70966.1|  385|Caenorhabditis elegans Hypothetical
           protein C08E3.6 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/83 (20%), Positives = 41/83 (49%)
 Frame = +2

Query: 143 QKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQIIHNAERI 322
           QK++   N++    +  K+  +      +L+ +D +G  K  RK+    +++ +++A+ +
Sbjct: 164 QKVVAGGNYIELCNKDLKLMVESGKAQMELFRLDNKGIQKKSRKKFIAGIEKALNSAKNL 223

Query: 323 SIYSVEDIFAREALAYRELCPVF 391
           S  +V+  F        +L P+F
Sbjct: 224 SSKTVQTQFVSYP-ELAQLLPIF 245


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +2

Query: 98   NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +2

Query: 98   NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/30 (40%), Positives = 23/30 (76%)
 Frame = +2

Query: 98   NKMAQELPIKVKESIQKIIQRENFVSHDVE 187
            ++++QE+ IK K+S +K+I+R N +  D+E
Sbjct: 1061 DEISQEIVIKTKDSTEKLIKRWNQLELDLE 1090


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical protein
            C11E4.6 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -1

Query: 439  FKSLVFRYSSFDLKIF-ENRTELSISQCFSCKDIFDRINTYTFCIV 305
            FK+L+  Y  + +++  ++R +L+   CF  +D  +R   +TFC++
Sbjct: 1078 FKTLLDGYGVYTIRVVCQDRKDLNFF-CFVARDTENRFFCHTFCVL 1122


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 159 EKTLYLTMLKQRKYIQMDLDLWATYML*MSEEQ 257
           EK+  +T L Q+K    DL LW T+++  S+++
Sbjct: 184 EKSAVITSLLQKKNFDGDLMLWLTFLIRESDQR 216


>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
           1, isoform b protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 122 IKVKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQI 301
           IK++ ++ ++ +R   ++   + K +    +  +G   V+   G   +G +E    ++Q+
Sbjct: 268 IKMRTALLQVSERIPTIA--TQLKVLSTVKATMLGSANVIGPYGQPVEGSEEDDEAMQQL 325

Query: 302 IHNAERISIYSVEDIF-AREALAYR 373
           +HNA+ + + SV+D+  A EA + +
Sbjct: 326 VHNAQNL-MQSVKDVVRAAEAASIK 349


>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
            1, isoform a protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 122  IKVKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQI 301
            IK++ ++ ++ +R   ++   + K +    +  +G   V+   G   +G +E    ++Q+
Sbjct: 909  IKMRTALLQVSERIPTIA--TQLKVLSTVKATMLGSANVIGPYGQPVEGSEEDDEAMQQL 966

Query: 302  IHNAERISIYSVEDIF-AREALAYR 373
            +HNA+ + + SV+D+  A EA + +
Sbjct: 967  VHNAQNL-MQSVKDVVRAAEAASIK 990


>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.elegans
            vinculin (deb-1) gene, complete cds. ).
          Length = 1010

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 122  IKVKESIQKIIQRENFVSHDVETKKIYPDGSGFMGDLYVVDVRGTTKDGRKEMSLFVKQI 301
            IK++ ++ ++ +R   ++   + K +    +  +G   V+   G   +G +E    ++Q+
Sbjct: 909  IKMRTALLQVSERIPTIA--TQLKVLSTVKATMLGSANVIGPYGQPVEGSEEDDEAMQQL 966

Query: 302  IHNAERISIYSVEDIF-AREALAYR 373
            +HNA+ + + SV+D+  A EA + +
Sbjct: 967  VHNAQNL-MQSVKDVVRAAEAASIK 990


>Z77135-1|CAB00876.1|  362|Caenorhabditis elegans Hypothetical
           protein T16A9.2 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 360 HWLIESSVRFSKIFKSKLEYLK 425
           H+L+ SS    ++ KS++EYLK
Sbjct: 149 HFLLHSSESMDRVIKSEVEYLK 170


>AF016439-2|AAB65897.1|  176|Caenorhabditis elegans Hypothetical
           protein R02F11.1 protein.
          Length = 176

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 235 CCRCQRNNKRRPQRNEFVC*ANYTQCRTYKY 327
           CCRCQ  N   P  N+ VC   +  C T  Y
Sbjct: 112 CCRCQSGNSTGPCVNQ-VCPTGF-MCNTNNY 140


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 331 INTYTFCIVYNLLNKQTHFFA-AVFCCSSDIYNI 233
           +NT T CI+Y L++ Q    A   F C  DI  I
Sbjct: 308 VNTTTHCIIYLLMSSQYRGTAKQTFLCGFDIQAI 341


>AL161712-4|CAC35907.1|  175|Caenorhabditis elegans Hypothetical
           protein Y66D12A.7 protein.
          Length = 175

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 290 VKQIIHNAERISIYSVEDIFAREALAYRELCPVFEDLQIEAGIPENERFK 439
           ++  I  A+R+ +  VE +     +   + CP FED++ E  +P  E F+
Sbjct: 73  LRSSIRVAKRLELVDVEGVEPMHTVWEDQECPTFEDVE-EDPLPIEEVFR 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,193,194
Number of Sequences: 27780
Number of extensions: 212511
Number of successful extensions: 671
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)