Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e22
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104     26   3.7  
12_02_0043 + 12762257-12762678,12762751-12762778                       26   3.7  
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523...    25   6.4  
06_01_1016 + 7944817-7945266,7945461-7945922                           25   8.4  
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229...    25   8.4  
04_04_0089 - 22724971-22725035,22725403-22725466,22725602-227256...    25   8.4  

>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
          Length = 744

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 88  KTSKMKTIYFVLLISVCAVSAIYLPDDSISADLDKYKSESFGSKLYSESKS 240
           K S   ++  + L+++  V A+ +       D D+Y  ++ G KLY E +S
Sbjct: 348 KRSDGTSVSAIALMALTCVLAMQIQRKRHKKDKDEYFKQNGGLKLYDEMRS 398


>12_02_0043 + 12762257-12762678,12762751-12762778
          Length = 149

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 57  TNEFCFLCATEDFQNENHLLRFTN 128
           ++EFC +  T   +N NHLL  T+
Sbjct: 113 SSEFCLITITSLCENHNHLLGLTS 136


>10_02_0094 -
           5228472-5228703,5229040-5229133,5230627-5230675,
           5231229-5231321,5231404-5231635,5232416-5232506,
           5232693-5232784,5232862-5232970,5233331-5233430,
           5233614-5233754,5233846-5234010,5234088-5234279,
           5234409-5234537,5234619-5234734,5234821-5234965,
           5235039-5235102,5235241-5235463,5235584-5236244,
           5236909-5237250
          Length = 1089

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 67  FAFYVLLKTSKMKT--IYFVLLISVCAVSAIYLPDDSISADLDKYKSESFGSK 219
           F  Y ++ + K+K   + F  LIS C  S        + +++    SES GSK
Sbjct: 551 FGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSK 603


>06_01_1016 + 7944817-7945266,7945461-7945922
          Length = 303

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 151 IYLPDDSISADLDKYKSESFGSKLY 225
           + +PD S +  L+ Y+ +  G+K+Y
Sbjct: 150 VLMPDVSFAETLESYRDDDGGAKIY 174


>05_01_0294 -
           2291175-2291223,2291591-2292039,2292143-2292211,
           2292397-2292449,2292492-2294478
          Length = 868

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 188 SRSAEIESSGKYIALTAQTLISKTK*MVFILEVFSS 81
           ++ ++  ++ KY  LTA TLI K K    ILEV+ S
Sbjct: 731 NKRSDFSTALKYANLTADTLIKKLK---KILEVYMS 763


>04_04_0089 -
           22724971-22725035,22725403-22725466,22725602-22725688,
           22726775-22726789,22736269-22736685,22738235-22738473,
           22739673-22740223,22740440-22740540
          Length = 512

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +2

Query: 137 VRLAQYTCLTIRFQLI*ISISQKVLGLNYIPKARVMTM 250
           + + ++ C+ ++F+     +S+KVL L+Y+ KA   T+
Sbjct: 423 IAVMEHECMDLKFK----EVSEKVLALHYLYKAPWATL 456


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,983,111
Number of Sequences: 37544
Number of extensions: 67939
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)