Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28e22
(252 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr... 26 3.1
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 26 4.1
Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical p... 25 5.4
Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical p... 25 5.4
Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical p... 25 5.4
Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical p... 25 5.4
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 25 5.4
U80931-1|AAB37998.2| 343|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF040643-14|AAB94956.1| 299|Caenorhabditis elegans Hypothetical... 25 5.4
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 25 5.4
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 25 7.1
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 25 7.1
AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear recep... 25 7.1
AF078781-4|AAC26918.1| 255|Caenorhabditis elegans Hypothetical ... 25 7.1
AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormo... 25 7.1
Z48045-1|CAA88103.2| 630|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF039042-3|AAP40513.1| 359|Caenorhabditis elegans Serpentine re... 25 9.4
AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical ... 25 9.4
>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
ZK370.4b protein.
Length = 1353
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 154 YLPDDSISADLDKYKSESFGSKLYSESKSYDDD 252
+L DD + D D Y+ ES S+ +ES + D+D
Sbjct: 1292 FLLDDDLFNDTDYYEEESSQSENGNESFTEDED 1324
>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
ZK370.4a protein.
Length = 1342
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 154 YLPDDSISADLDKYKSESFGSKLYSESKSYDDD 252
+L DD + D D Y+ ES S+ +ES + D+D
Sbjct: 1281 FLLDDDLFNDTDYYEEESSQSENGNESFTEDED 1313
>Z77656-2|CAE17769.1| 724|Caenorhabditis elegans Hypothetical
protein F07B10.4 protein.
Length = 724
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 61 TNFAFYVLLKTSKMKTIYFVLLISVCAVSAIYLPDDSISADLDKYKSESF 210
T++ F V++ S T++F + VC+++ I + + D YK+ +
Sbjct: 584 TSWEFIVMMIASMTATVFFACIFVVCSLATIIVVQS--ARDTMSYKTVKY 631
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 30 PTSINLAYLTNEFCFLCATEDFQNE 104
PT + L Y+ + CF A + FQ E
Sbjct: 323 PTDVELTYMIAQLCFEYAGKRFQGE 347
>Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 27 RPTSINLAYLTNEFCFLCATEDFQNENHL 113
RPT +NL Y LCA ++F +EN+L
Sbjct: 369 RPTQLNLKYKKGTDPGLCA-QEFLSENNL 396
>Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 27 RPTSINLAYLTNEFCFLCATEDFQNENHL 113
RPT +NL Y LCA ++F +EN+L
Sbjct: 367 RPTQLNLKYKKGTDPGLCA-QEFLSENNL 394
>Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 27 RPTSINLAYLTNEFCFLCATEDFQNENHL 113
RPT +NL Y LCA ++F +EN+L
Sbjct: 369 RPTQLNLKYKKGTDPGLCA-QEFLSENNL 396
>Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 27 RPTSINLAYLTNEFCFLCATEDFQNENHL 113
RPT +NL Y LCA ++F +EN+L
Sbjct: 367 RPTQLNLKYKKGTDPGLCA-QEFLSENNL 394
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
K03H1.5 protein.
Length = 1385
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 25 YDQQVLIWRI*RTNFAFYVLLKTSKMKTIYFVLLISVCAVSAIYLP 162
Y+Q W+I TN +L K K IY LL + +Y P
Sbjct: 1073 YEQFASFWKIDGTNDKIGGVLFQDKFKPIYNPLLFAESDYRPVYWP 1118
>U80931-1|AAB37998.2| 343|Caenorhabditis elegans Hypothetical
protein T01B11.1 protein.
Length = 343
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 70 AFYVLLKTSKMKTIYFVLLISVCAVSAIYL 159
AFY L+K + ++ YFV LIS+ A + + L
Sbjct: 35 AFYNLMK--RKRSNYFVFLISIIAANVLTL 62
>AF040643-14|AAB94956.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.1 protein.
Length = 299
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 73 FYVLLKTSKMKTIYFVLLISVCAV-SAIYLPDDSISADLDKYKSESFG 213
FYVL + + + YF L+ C + S I LPD + D KY +G
Sbjct: 157 FYVLKQHLALHSPYFKNLLKECTLDSEIQLPDVD-TDDFQKYLEILYG 203
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 73 FYVLLKTSKMKTIYFVLLISVCAV-SAIYLPDDSISADLDKYKSESFG 213
FYVL + + + YF L+ C + S I LPD + D KY +G
Sbjct: 157 FYVLKQHLALHSPYFKNLLKECTLDSEIQLPDVD-TDDFQKYLEILYG 203
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 100 MKTIYFV--LLISVCAVSAIYLPDDSISADLDKYKSESFGSKLYSESKS 240
MK I FV +LI + ++ D D +ESF +K YSE +S
Sbjct: 1 MKIIIFVCFILIFYLPIQKKHVNSQQQGIDSDDGDAESFFNKSYSEHQS 49
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 100 MKTIYFV--LLISVCAVSAIYLPDDSISADLDKYKSESFGSKLYSESKS 240
MK I FV +LI + ++ D D +ESF +K YSE +S
Sbjct: 1 MKIIIFVCFILIFYLPIQKKHVNSQQQGIDSDDGDAESFFNKSYSEHQS 49
>AY204203-1|AAO39204.1| 391|Caenorhabditis elegans nuclear receptor
NHR-115 protein.
Length = 391
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 KIVTNEL-VRPTSINLAYLTNEFCFLCATEDFQNENHLLRFTN 128
KIV + L + PT + L ++ + CF A + FQ E +L+ T+
Sbjct: 278 KIVESLLKLDPTDVELTFMFAQLCFEYAGKRFQGE--ILKITD 318
>AF078781-4|AAC26918.1| 255|Caenorhabditis elegans Hypothetical
protein B0545.4 protein.
Length = 255
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 203 SDLYLSRSAEIESSGKYIALTAQTLISK 120
+D L +I+S GK+IALT Q+L K
Sbjct: 111 TDFELYIQEKIKSRGKHIALTDQSLTVK 138
>AF016675-6|AAF02171.2| 391|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 115 protein.
Length = 391
Score = 25.0 bits (52), Expect = 7.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 KIVTNEL-VRPTSINLAYLTNEFCFLCATEDFQNENHLLRFTN 128
KIV + L + PT + L ++ + CF A + FQ E +L+ T+
Sbjct: 278 KIVESLLKLDPTDVELTFMFAQLCFEYAGKRFQGE--ILKITD 318
>Z48045-1|CAA88103.2| 630|Caenorhabditis elegans Hypothetical
protein C41C4.3 protein.
Length = 630
Score = 24.6 bits (51), Expect = 9.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 58 RTNFAFYVLLKTSKMKTIYFVLLIS-VCAVSAIYLPDDS 171
R+ F+ L+T IYF LLIS V A + DD+
Sbjct: 2 RSTITFFESLETHMKFQIYFFLLISCVLAKKPVIFCDDA 40
>AF039042-3|AAP40513.1| 359|Caenorhabditis elegans Serpentine
receptor, class w protein101 protein.
Length = 359
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 6 IVTNELVRPTSINLAYLTNEFCFLCAT 86
I+T + +R TSIN+ + C LC T
Sbjct: 46 ILTRKSMRATSINVFMIGIAICDLCTT 72
>AF016675-7|AAB66135.1| 387|Caenorhabditis elegans Hypothetical
protein T27B7.3 protein.
Length = 387
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 24 VRPTSINLAYLTNEFCFLCATEDFQNENHLLRFTN 128
V PT + L Y+ + CF A + FQ + +L+ T+
Sbjct: 282 VDPTDVELTYMFAQSCFEYAGKRFQGD--ILKITD 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,846,299
Number of Sequences: 27780
Number of extensions: 74473
Number of successful extensions: 257
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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