Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e22
         (252 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   0.59 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   1.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   5.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    19   7.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   7.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          19   9.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   9.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 0.59
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 109 IYFVLLISVC-AVSAIYLP--DDSISADLDKYKSESFGSKLYSESKSYDD 249
           + F+LL+ +  AV A  +   DD+     +KY+    G  L SESK + D
Sbjct: 88  LLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSESKDFID 137


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 145 SAIYLPDDSISADLDKYKSE 204
           S  Y+P  S+  D+D Y +E
Sbjct: 49  SGSYIPGASLPIDVDVYNTE 68


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 85  VAHRKQNSFVKYAK 44
           +A ++QNS +++AK
Sbjct: 485 IASQRQNSVIQFAK 498


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 22  SYDQQVLIWRI*RTNFAFYVLLKTSKMKTIY 114
           SY +   IW +  T F F  +++ + + TIY
Sbjct: 289 SYIKASEIWFLGCTIFLFAAMVEFAFVNTIY 319


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 209 KLSDLYLSRSAEIESSGKY 153
           K++D  LSR  E  + G Y
Sbjct: 775 KIADFGLSREIESATEGAY 793


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 90  DFQNENHLL 116
           DFQN+N+L+
Sbjct: 396 DFQNKNNLI 404


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 90  DFQNENHLL 116
           DFQN+N+L+
Sbjct: 396 DFQNKNNLI 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,086
Number of Sequences: 438
Number of extensions: 932
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)