Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28e21
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 58 7e-10
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 45 4e-06
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 30 0.13
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 30 0.13
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 28 0.51
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 2.7
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 3.6
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 4.8
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 25 6.3
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 6.3
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 24 8.4
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 24 8.4
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 57.6 bits (133), Expect = 7e-10
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = +2
Query: 149 RVNHAAVCIGDKIYSFGGYCSTEEYKDWEPIPVHILNTATLRWTSVNYKRSDVXPFQRYG 328
R+ HA++ IG+ FGG + + D + +++LNT++L W N S P RYG
Sbjct: 134 RLGHASILIGNAFIVFGGL-TNHDVADRQDNSLYLLNTSSLVWQKAN--ASGARPSGRYG 190
Query: 329 HTAVAYGHKVYMWGGRNNAVACDTLSCFD 415
HT G K+ ++GGR + L CFD
Sbjct: 191 HTISCLGSKICLFGGRLLDYYFNDLVCFD 219
Score = 48.4 bits (110), Expect = 4e-07
Identities = 27/88 (30%), Positives = 40/88 (45%)
Frame = +2
Query: 149 RVNHAAVCIGDKIYSFGGYCSTEEYKDWEPIPVHILNTATLRWTSVNYKRSDVXPFQRYG 328
R H C+G KI FGG + D ++ LNT+ RW + P R G
Sbjct: 188 RYGHTISCLGSKICLFGGRLLDYYFNDLVCFDLNNLNTSDSRWELASVVND--PPPARAG 245
Query: 329 HTAVAYGHKVYMWGGRNNAVACDTLSCF 412
H A + K+Y++GG + A + L C+
Sbjct: 246 HVAFTFSDKLYIFGGTDGANFFNDLWCY 273
Score = 37.1 bits (82), Expect = 0.001
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +2
Query: 176 GDKIYSFGGYCSTEEYKDWEPIPVHILNTATLRWTSVNYKRSDVXPFQRYGHTAVAYGHK 355
G +IY FGG S + K+ + +LN AT ++TS+ + P R GH ++ G+
Sbjct: 92 GQEIYIFGGVASDSQPKN----DLWVLNLATSQFTSL--RSLGETPSPRLGHASILIGNA 145
Query: 356 VYMWGGRNNAVACD 397
++GG N D
Sbjct: 146 FIVFGGLTNHDVAD 159
Score = 34.7 bits (76), Expect = 0.006
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +2
Query: 143 PMRVNHAAVCIGDKIYSFGGYCSTEEYKD-WEPIPVHILNTATLRWTSVNYKRSDVXPFQ 319
P R H A DK+Y FGG + D W H +A W+ V + V P
Sbjct: 241 PARAGHVAFTFSDKLYIFGGTDGANFFNDLW---CYHPKQSA---WSKV--ETFGVAPNP 292
Query: 320 RYGHTAVAYGHKVYMWGGR 376
R GH A +Y++GGR
Sbjct: 293 RAGHAASVVEGILYVFGGR 311
Score = 28.3 bits (60), Expect = 0.51
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +2
Query: 149 RVNHAAVCIGDKIYSFGGYCSTEEYKDWEPIPVHILNTATLRWTSVNYKRSDV--XPFQR 322
R HAA + +Y FGG S + + ++ ++ W YK SD+ P R
Sbjct: 293 RAGHAASVVEGILYVFGGRASDGTFLN----DLYAFRLSSKHW----YKLSDLPFTPSPR 344
Query: 323 YGHTAVAYGHKVYMWGGRNNAVACDT 400
HT G + + GG+ A D+
Sbjct: 345 SSHTLSCSGLTLVLIGGKQGKGASDS 370
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 45.2 bits (102), Expect = 4e-06
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +2
Query: 143 PMRVNHAAVCIGDKIYSFGGYCSTEEYKDWE--PIPVHILNTATLRWTSVNYKRSDVXPF 316
P RV H+ VC D IY FGG C +E +E ++ N + +W V+ P
Sbjct: 111 PARVGHSIVCSADTIYLFGG-CDSETDSTFEVGDNSLYAYNFKSNQWNLVS--TQSPLPS 167
Query: 317 QRYGHTAVAYGHKVYMWGGRNNAVACDTLSCFDT 418
R GH+ + K++++GG + + FDT
Sbjct: 168 PRTGHSMLLVDSKLWIFGGECQGKYLNDIHLFDT 201
Score = 44.8 bits (101), Expect = 6e-06
Identities = 27/86 (31%), Positives = 39/86 (45%)
Frame = +2
Query: 125 VHIEGGPMRVNHAAVCIGDKIYSFGGYCSTEEYKDWEPIPVHILNTATLRWTSVNYKRSD 304
+H P R NH+ + KI+ GG+ T D + + + TL WT V +
Sbjct: 240 LHSSSPPPRSNHSVTLVQGKIFVHGGHNDTGPLSD-----LWLFDLETLSWTEV--RSIG 292
Query: 305 VXPFQRYGHTAVAYGHKVYMWGGRNN 382
P R GH A VY++GGR+N
Sbjct: 293 RFPGPREGHQATTIDDTVYIYGGRDN 318
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 30.3 bits (65), Expect = 0.13
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 326 HIFEMGXRLISYSLQRSILELLCSIYGLVLAPNLYILQWNNIHQ 195
HIFE R+ + + Q S L CSI+G + LY+L W I Q
Sbjct: 7 HIFE---RICAKAFQSS---LTCSIFGFTVLLILYLLDWKRIAQ 44
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 30.3 bits (65), Expect = 0.13
Identities = 14/55 (25%), Positives = 32/55 (58%)
Frame = -2
Query: 289 VYRGPS*SCCVQYMDWYWLPIFIFFSGTISTKRIDFIANTYSCMIDSHRSPFDMH 125
+++G S +++++ Y +P ++F+ GT+S K + + ++D +R P MH
Sbjct: 225 IHKGMSDEEVIEFVNHY-MPQYVFYLGTLSNK-VHLNPHCLEIILDENRYPVVMH 277
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 28.3 bits (60), Expect = 0.51
Identities = 15/74 (20%), Positives = 35/74 (47%)
Frame = +2
Query: 152 VNHAAVCIGDKIYSFGGYCSTEEYKDWEPIPVHILNTATLRWTSVNYKRSDVXPFQRYGH 331
+ + + GD+ + +GG + + +++++ T W V Y+ + P RY H
Sbjct: 33 IGESVIKYGDEAFVYGGRDALNAQLVND---MYVVDLNTCSWKQVEYQGNQ-KPIPRYFH 88
Query: 332 TAVAYGHKVYMWGG 373
+ + +K+ +GG
Sbjct: 89 SGDLWNNKLIFFGG 102
Score = 25.4 bits (53), Expect = 3.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 254 LNTATLRWTSVNYKRSDVXPFQRYGHTAVAYGHKVYMWGGRN 379
L +T +TS S+ P G + + YG + +++GGR+
Sbjct: 10 LRNSTNIFTSTFSLSSNNVPKPLIGESVIKYGDEAFVYGGRD 51
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.8 bits (54), Expect = 2.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 276 HLRVAVFNIWTGIGSQSLYSSVEQYP 199
H R+ V N+ + +SLY + +YP
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYP 54
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 3.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 158 HAAVCIGDKIYSFGGYCSTEEYKDW 232
+ VC D+IY YC E DW
Sbjct: 89 YEVVCTEDRIYLAMEYCPNGELYDW 113
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 4.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 94 FKFHCNNEMDSAYRRGTDESQSCS 165
+K H + M A RRGT+E SCS
Sbjct: 246 WKHHRDAVMGLAMRRGTNEMFSCS 269
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 6.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 95 LNSIATMKWTVHIEG 139
+NS+ +WT+HIEG
Sbjct: 109 INSLPIPEWTLHIEG 123
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 176 GDKIY-SFGGYCSTEEYKDWEPIPVHILN 259
G+++Y SF G TEE + I V +LN
Sbjct: 548 GERVYTSFAGILETEENLELASIMVEVLN 576
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 273 LRVAVFNIWTGIGSQSLYS 217
L F WTG+ SQSLY+
Sbjct: 1226 LSCLTFWFWTGVYSQSLYT 1244
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +1
Query: 331 HSSCLWSQGIYVGRQE*CGSM*YSLVLRH 417
H C W G+ ++ + Y L LRH
Sbjct: 461 HDKCFWHTGMASSYEDYTATFIYGLYLRH 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,573
Number of Sequences: 5004
Number of extensions: 40229
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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