Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e21
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   2.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.2  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   4.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   4.3  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   5.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   5.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 254 IYGLVLAPNLYILQWNNIHQTNRFY 180
           +YG+ L+P  + L +N+    N +Y
Sbjct: 252 VYGMALSPVTHNLYYNSPSSENLYY 276


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 233 EPIPVHILNTATLRWTSVNYKRSDV 307
           EP+  H+LN    RW  +  + S +
Sbjct: 114 EPLSPHLLNLEVERWRPLRSRLSPI 138


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -1

Query: 341 QLLCAHIFEMGXRLISYSLQRSILELLCSIYGLVLAP---NLY--ILQWNNIHQTN 189
           Q L +  F    R  ++++      L   I+G+ L+P   NLY   L  +N++  N
Sbjct: 222 QRLTSSTFASDPRYTTFTINGESFTLQSGIFGMALSPLTQNLYYSALSSHNLNYVN 277


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -1

Query: 416 CRSTREYHMLPHYSCRPTYIPCDHRQLLCAHIFEMGXRLISYSLQRSIL 270
           C++T   H L +  C P  IP    +  C+   ++    I + ++RS +
Sbjct: 29  CQATPVIHFLQYPGCVPKPIPSYACRGRCSSYLQVSGSKI-WQMERSCM 76


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +2

Query: 179 DKIYSFGGYCSTEEYKDWEPIP-VHILNTATLRW 277
           DK Y   GY + E  K   P P   I +   + W
Sbjct: 212 DKFYGTPGYTAPEVIKQNRPTPAADIYSLGIVAW 245


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 206 CSTEEYKDWEPIPVHILNTATLRWTSV 286
           CS EE +  + +  HI  T    W+ +
Sbjct: 83  CSPEETRQIKKVLSHIQRTYPKEWSKI 109


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 206 CSTEEYKDWEPIPVHILNTATLRWTSV 286
           CS EE +  + +  HI  T    W+ +
Sbjct: 83  CSPEETRQIKKVLSHIQRTYPKEWSKI 109


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 172 TYSCMIDSHRSPFD 131
           T +CM+D H  P D
Sbjct: 158 TLACMMDLHYYPLD 171


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 173  IGDKIYSFGGYCSTEEYKDWEPIPVHIL 256
            +GD + +   YC TEE     P  + ++
Sbjct: 1196 VGDGVPTTVTYCQTEEDVPGSPADIKVV 1223


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 173  IGDKIYSFGGYCSTEEYKDWEPIPVHIL 256
            +GD + +   YC TEE     P  + ++
Sbjct: 1192 VGDGVPTTVTYCQTEEDVPGSPADIKVV 1219


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 408  HERVSHATALFLPPH 364
            H+ V+H   +  PPH
Sbjct: 1354 HDTVTHQLIVHAPPH 1368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,387
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)