Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e18
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    52   3e-08
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   5.9  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    24   7.8  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   7.8  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 52.0 bits (119), Expect = 3e-08
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = +3

Query: 78  RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSX 257
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE + 
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 258 F-----NNIEFDSYIIPSNEIKNNEFRLLDVD 338
           F       + FDSY++P  +++    R L+VD
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVD 160


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 342 DYLHLIVGIHYFLFHWMGLY 283
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 199 GLLSSS-NKYNNRNDGKAMKINVKAGIIVQINSIIC 95
           G LS   NK +N+N  KA  +  K G+   I  I C
Sbjct: 91  GFLSQQENKSSNQNPSKANNLFDKLGVSKPITFIAC 126


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 312 YFLFHWMGLYM-SQIQYY*NXN 250
           YF+ HW G Y+ S +Q Y + N
Sbjct: 150 YFVPHWNGTYLASNVQIYNSSN 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 944,200
Number of Sequences: 5004
Number of extensions: 13543
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)