Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e18
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    31   0.35 
01_06_0044 - 25922298-25923434                                         27   5.6  
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    26   9.9  

>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
 Frame = -1

Query: 322 RNSLFFISLDGIIYESNSILLKXEYSYLQYH*CPI-DFSVISGL------LSSSNKY 173
           R+ LF +  D I YE+NS++   E ++     CP+ DF+V S L      +S++NKY
Sbjct: 80  RDHLFRV--DSIFYENNSLVAAVETTFAGDADCPVPDFNVTSSLSPYPFIISNTNKY 134


>01_06_0044 - 25922298-25923434
          Length = 378

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 219 IGHQ*Y*RYEYSXFNNIEFDSYIIPSNEIKNNEFRLLDVD 338
           IGHQ Y     +  N +  + +++P +E+ +    LLDV+
Sbjct: 143 IGHQDYLHSGLTVCNPVSGERWVLPPHEVSDETVVLLDVN 182


>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 302 NKK**IPTIRCR*SYYFTNKQPNSNYNY 385
           N++  + TI CR  +YF N Q +S Y +
Sbjct: 129 NRQDDLRTIACRTLFYFVNNQVDSTYMF 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,894,540
Number of Sequences: 37544
Number of extensions: 59608
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)