Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e16
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16...    38   0.005
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269     33   0.10 
01_07_0304 - 42628086-42628104,42628828-42630263                       28   3.8  
07_01_0131 - 966178-966291,966432-967685                               27   6.7  

>05_01_0024 -
           164618-165139,166884-166949,167046-167216,167321-167422,
           167538-167600,167679-167825,168234-168359,168742-168921,
           169183-169322,169688-169861,170096-170123
          Length = 572

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 407 PCQEEKEKVLQCYSTNADXSLLCSVLVNQFNECV 508
           PC EE+    QCY +NA   L C+  V +F  CV
Sbjct: 526 PCTEERSNCRQCYVSNAQDPLKCAEAVKRFEACV 559


>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
          Length = 309

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +2

Query: 230 RKQQEHAAEEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPP 409
           RKQ+ HAA    W + IE ++        G   +  + L+  +E+F+  N D   +K+P 
Sbjct: 137 RKQRVHAA---LWVKEIEKMEEARLGGGGGGADDIDRLLDSCSEIFDSGNTDFGDSKIPS 193

Query: 410 CQEEKEK 430
             E K K
Sbjct: 194 TAEIKTK 200


>01_07_0304 - 42628086-42628104,42628828-42630263
          Length = 484

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 338 KTLEETNELF---NFINNDKNVNKLPPCQEEKEKV 433
           +TLE+  ELF   N   +D +    PP  EE+EK+
Sbjct: 422 RTLEQMGELFRIHNMAGDDDSAATRPPSPEEEEKI 456


>07_01_0131 - 966178-966291,966432-967685
          Length = 455

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
 Frame = +2

Query: 239 QEHAAEEAYWTRRIENLKRVHEKINSGMELEYQ---------KTLEETNELFNFINNDKN 391
           ++H    ++   +    KR+     SG  L+ Q          T+E+T+E F F+N+   
Sbjct: 61  KDHQVSNSFAPSKFNPAKRIRFCRTSGQSLQQQLQQVLASLEATIEDTSEFFMFLNSYPR 120

Query: 392 VNKLP 406
           +N+ P
Sbjct: 121 LNRQP 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,150
Number of Sequences: 37544
Number of extensions: 157541
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)