Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28e16
(514 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC014839-1|AAH14839.1| 227|Homo sapiens coiled-coil-helix-coile... 45 1e-04
BC011596-1|AAH11596.1| 227|Homo sapiens coiled-coil-helix-coile... 45 1e-04
AK000427-1|BAA91157.1| 227|Homo sapiens protein ( Homo sapiens ... 45 1e-04
X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein. 36 0.083
D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 prot... 36 0.083
BC006123-1|AAH06123.1| 235|Homo sapiens coiled-coil-helix-coile... 36 0.11
BC015325-1|AAH15325.1| 222|Homo sapiens ZH2C2 protein protein. 29 7.2
>BC014839-1|AAH14839.1| 227|Homo sapiens
coiled-coil-helix-coiled-coil-helix domain containing 3
protein.
Length = 227
Score = 45.2 bits (102), Expect = 1e-04
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +2
Query: 254 EEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKV 433
++A++ ++ L+ + +YQK EE F K P C + + K+
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKF------KRYESHPVCADLQAKI 190
Query: 434 LQCYSTNADXSLLCSVLVNQFNECV 508
LQCY N +L CS L Q+ CV
Sbjct: 191 LQCYRENTHQTLKCSALATQYMHCV 215
>BC011596-1|AAH11596.1| 227|Homo sapiens
coiled-coil-helix-coiled-coil-helix domain containing 3
protein.
Length = 227
Score = 45.2 bits (102), Expect = 1e-04
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +2
Query: 254 EEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKV 433
++A++ ++ L+ + +YQK EE F K P C + + K+
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKF------KRYESHPVCADLQAKI 190
Query: 434 LQCYSTNADXSLLCSVLVNQFNECV 508
LQCY N +L CS L Q+ CV
Sbjct: 191 LQCYRENTHQTLKCSALATQYMHCV 215
>AK000427-1|BAA91157.1| 227|Homo sapiens protein ( Homo sapiens
cDNA FLJ20420 fis, clone KAT02462. ).
Length = 227
Score = 45.2 bits (102), Expect = 1e-04
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +2
Query: 254 EEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPPCQEEKEKV 433
++A++ ++ L+ + +YQK EE F K P C + + K+
Sbjct: 137 QDAFYKEQLARLEERSSEFYRVTTEQYQKAAEEVEAKF------KRYESHPVCADLQAKI 190
Query: 434 LQCYSTNADXSLLCSVLVNQFNECV 508
LQCY N +L CS L Q+ CV
Sbjct: 191 LQCYRENTHQTLKCSALATQYMHCV 215
>X75304-1|CAA53052.1| 3259|Homo sapiens giantin protein.
Length = 3259
Score = 35.9 bits (79), Expect = 0.083
Identities = 23/97 (23%), Positives = 42/97 (43%)
Frame = +2
Query: 107 ENAIQVSQEAIDRIQAQLNAKQAEXXXXXXXXXXXXXXXXXRKQQEHAAEEAYWTRRIEN 286
E +Q S+E R+ ++N K+ + +Q+H E + +EN
Sbjct: 2360 ETDLQASRELTSRLHEEINMKEQKIISLLSGKEEAIQVAIAELRQQHDKE----IKELEN 2415
Query: 287 LKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVN 397
L E+ N +E E +K +++TN+L + K N
Sbjct: 2416 LLSQEEEENIVLEEENKKAVDKTNQLMETLKTIKKEN 2452
>D25542-1|BAA05025.1| 3225|Homo sapiens golgi antigen gcp372 protein.
Length = 3225
Score = 35.9 bits (79), Expect = 0.083
Identities = 23/97 (23%), Positives = 42/97 (43%)
Frame = +2
Query: 107 ENAIQVSQEAIDRIQAQLNAKQAEXXXXXXXXXXXXXXXXXRKQQEHAAEEAYWTRRIEN 286
E +Q S+E R+ ++N K+ + +Q+H E + +EN
Sbjct: 2326 ETDLQASRELTSRLHEEINMKEQKIISLLSGKEEAIQVAIAELRQQHDKE----IKELEN 2381
Query: 287 LKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVN 397
L E+ N +E E +K +++TN+L + K N
Sbjct: 2382 LLSQEEEENIVLEEENKKAVDKTNQLMETLKTIKKEN 2418
>BC006123-1|AAH06123.1| 235|Homo sapiens
coiled-coil-helix-coiled-coil-helix domain containing 6
protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.11
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +2
Query: 230 RKQQEHAAEEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLPP 409
R +E + EA RR K E+I Y+ + E+ +E + + + ++ P
Sbjct: 136 RLARELESREAELRRRDTFYKEQLERIERKNAEMYKLSSEQFHEAASKMESTIKPRRVEP 195
Query: 410 -CQEEKEKVLQCYSTNADXSLLCSVLVNQFNECV 508
C + ++L CY LLCS LV + CV
Sbjct: 196 VCSGLQAQILHCYRDRPHEVLLCSDLVKAYQRCV 229
>BC015325-1|AAH15325.1| 222|Homo sapiens ZH2C2 protein protein.
Length = 222
Score = 29.5 bits (63), Expect = 7.2
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 245 HAAEEAYWTRRIENLKRVHEKINSGMELEYQKTLEETNELFNFINNDKNVNKLP-PCQEE 421
H + AY+ R E SG+ +K + + +LF ++ D+ N+L +EE
Sbjct: 11 HLKQIAYYKRTCEYHSTTLPSERSGIRRAAKKFVFKEKKLF-YVGKDRKQNRLVIVSEEE 69
Query: 422 KEKVL-QCYSTNA 457
K+KVL +C+ ++
Sbjct: 70 KKKVLRECHENDS 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,986,137
Number of Sequences: 237096
Number of extensions: 937916
Number of successful extensions: 2303
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2303
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -