Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e08
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    26   2.7  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   2.7  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   2.7  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   4.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   8.3  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 279 MTNADPS--KGYKGITCFIVERETPGLSVAKPENKLGIRASG 398
           +T ADP   + YK +  F   +  PG  V  P+  + I A G
Sbjct: 117 LTEADPDDVRQYKNLAEFFTRKLKPGARVIDPDAPIVIPADG 158


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/81 (19%), Positives = 35/81 (43%)
 Frame = +3

Query: 54  LVNSLFMKLGTEEQKKKYLTKLCTEYAGSFCLTEPSSGSDAFALKTVAKKEGEHYIISGS 233
           LVN+      + +++ + L   C +Y   +        +  +    VA    E+Y  +GS
Sbjct: 18  LVNAFAFDYASLQEQDENLLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS 77

Query: 234 KMWISNSDVAGVFLVMTNADP 296
           K   S+S ++   +  +++ P
Sbjct: 78  KSLSSSSILSNSTISTSSSTP 98


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 86  RRTKKEIFNETLHGICWQFLSHRA-QLRIRC 175
           +++ K++FN  L G C   LSHR  Q  + C
Sbjct: 870 KKSIKDVFNVLLEGRCSLILSHRCFQYMVLC 900


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 44   SQHLSQLSVHEARYRRTKKEIFNETLH 124
            S  L  +S+H  + R ++K+IFN  LH
Sbjct: 1265 SSILQFVSLHRQKIRISRKKIFNYALH 1291


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 257 CRWSLSSDDQC*SFQGLQGHHLLYR 331
           C  +L  DD    ++ +QG HLLYR
Sbjct: 494 CNEALFDDDNG-DYKAIQGDHLLYR 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,038
Number of Sequences: 5004
Number of extensions: 36668
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)