Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e08
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141...   116   1e-26
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310...    90   8e-19
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266...    87   7e-18
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367...    75   4e-14
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006...    60   1e-09
06_02_0285 + 13789900-13790071,13790407-13790525,13790642-137907...    45   3e-05
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478...    39   0.002
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    36   0.018
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...    36   0.018
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    27   6.3  
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505...    27   6.3  

>05_01_0195 -
           1409820-1409966,1410304-1410360,1410774-1410828,
           1410902-1411002,1411051-1411205,1411395-1411459,
           1411545-1411595,1411817-1411893,1412153-1412262,
           1412355-1412403,1412528-1412572,1412689-1412813,
           1413087-1413228,1413336-1413446
          Length = 429

 Score =  116 bits (279), Expect = 1e-26
 Identities = 59/152 (38%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
 Frame = +3

Query: 3   LSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSGSDAF 179
           +SR   +V      H+ L  +  ++ G+  QK KYL KL + E+ G+  ++EP+SGSD  
Sbjct: 104 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNSGSDVV 163

Query: 180 ALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVMTNADPSKGYKGITCFIVERETPGLSV 359
           ++K  A+K    Y+I+G+KMW +N   A   +V    D + G KGIT FI+E+  PG S 
Sbjct: 164 SMKCKAEKVDGGYVINGNKMWCTNGPSAQTLVVYAKTDIAAGSKGITAFIIEKGMPGFST 223

Query: 360 AKPENKLGIRASGTCMVHFDNVKVHESSILGE 455
           A+  +KLG+R S TC + F+N  V   ++LGE
Sbjct: 224 AQKLDKLGMRGSDTCELVFENCFVPHENVLGE 255


>01_01_0413 -
           3107668-3107796,3107879-3107971,3108082-3108253,
           3108341-3108417,3108514-3108673,3108766-3108875,
           3109384-3109443,3109545-3109618,3109748-3109871,
           3110795-3110872,3111169-3111275,3112572-3112673,
           3112800-3112815
          Length = 433

 Score = 90.2 bits (214), Expect = 8e-19
 Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 1/150 (0%)
 Frame = +3

Query: 3   LSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTEYA-GSFCLTEPSSGSDAF 179
           ++RVD + + ++ +H++L        G+E QK+KYL  L    A G + LTEP+ GSDA 
Sbjct: 120 IARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCWALTEPNHGSDAS 179

Query: 180 ALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVMTNADPSKGYKGITCFIVERETPGLSV 359
           +L T A K    + I G K WI NS  A V +V+     +K   G   FIV +  PGL  
Sbjct: 180 SLITTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQLNG---FIVRKGAPGLKA 236

Query: 360 AKPENKLGIRASGTCMVHFDNVKVHESSIL 449
            K ENK+G+R      + F+ V V E   L
Sbjct: 237 TKIENKIGLRMVQNGDIVFNKVFVPEEDRL 266


>06_02_0283 +
           13726047-13726090,13726160-13726266,13726515-13726621,
           13726735-13726812,13734948-13735071,13735585-13735658,
           13735742-13735801,13737561-13737670,13737806-13737965,
           13738218-13738360,13738461-13738605,13738727-13738819,
           13740070-13740186
          Length = 453

 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
 Frame = +3

Query: 3   LSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSGSDAF 179
           ++RVD ++A++  + + L      +LG+E QK+KYL  L   +    + L+EP+ GSDA 
Sbjct: 131 IARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQKVCVYALSEPNHGSDAS 190

Query: 180 ALKTVAKKEGEHYIISGSKMWISNSDVAGVFLVMTNADPSKGYKGITCFIVERETPGLSV 359
           +L T A+K    +I++G K W +NS  A +F+V+     +    G   FIV    PGL +
Sbjct: 191 SLNTTARKVPGGWILNGQKRWPANSSFADIFVVLACNTSTNQING---FIVNGGAPGLKI 247

Query: 360 AKPENKLGIRASGTCMVHFDNVKVHESSIL 449
           +K +NK+ +R    C +  ++V V +   L
Sbjct: 248 SKIDNKMSLRVVQNCDILLEDVFVPDDDRL 277


>05_01_0464 -
           3670397-3670525,3671152-3671244,3671366-3671537,
           3671626-3671702,3671819-3671978,3672104-3672213,
           3672321-3672380,3672492-3672629,3672922-3672999,
           3673227-3673333,3674506-3674598,3674708-3674723
          Length = 410

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
 Frame = +3

Query: 81  GTEEQKKKYLTKLCTEYA--GSFCLTEPSSGSDAFALKTVAKKEGEHYIISGSKMWISNS 254
           G+E QK+KYL  L T++   G + LTEP  GSDA +L+T A K    + + G K WI N 
Sbjct: 123 GSEAQKQKYLPSL-TQFRTIGCWALTEPDYGSDASSLRTAATKVPGGWHLDGQKRWIGNG 181

Query: 255 DVAGVFLVMTNADPSKGYKGITCFIVERETPGLSVAKPENKLGIR 389
             A V +++     +    G   FIV++  PGL   K ENK+G+R
Sbjct: 182 TFADVLIILARNSDTNQLNG---FIVKKGAPGLKCTKIENKIGLR 223


>07_03_1669 +
           28499143-28499409,28499915-28500055,28500528-28500659,
           28501185-28501373,28501503-28501580,28502267-28502386,
           28502701-28502818,28503012-28503280,28503428-28503622,
           28503737-28503879,28504096-28504180,28504270-28504479,
           28504559-28504711,28504862-28504966,28505044-28505235
          Length = 798

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 37/135 (27%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
 Frame = +3

Query: 66  LFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPS-SGSDAFALKTVAKKEGEHYIISGSKM 239
           + ++ GT+EQ+K++L  L   +    F +TEP  + SDA  ++    ++G+ Y+I+G+K 
Sbjct: 504 VLLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKW 563

Query: 240 WISNS--DVAGVFLVMTNAD-PSKGYKGITCFIVERETPGLSVAKPENKLGI--RASGTC 404
           W S +      + ++M   D  +  +K  +  +V+ +TPG+ + +P    G      G  
Sbjct: 564 WTSGAMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHA 623

Query: 405 MVHFDNVKVHESSIL 449
            + F+NV+V  ++IL
Sbjct: 624 EITFENVRVPATNIL 638


>06_02_0285 +
           13789900-13790071,13790407-13790525,13790642-13790751,
           13790887-13791046,13791407-13791483,13792299-13792470,
           13792580-13792672,13793617-13793733
          Length = 339

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 25/78 (32%), Positives = 40/78 (51%)
 Frame = +3

Query: 216 YIISGSKMWISNSDVAGVFLVMTNADPSKGYKGITCFIVERETPGLSVAKPENKLGIRAS 395
           +I++G K W +N   A VF+V+     +    G   FIV   +PGL ++K ENK  +R  
Sbjct: 102 WILNGQKRWPANGSFADVFVVLACNTSNNQING---FIVNGGSPGLKISKIENKTSLRVV 158

Query: 396 GTCMVHFDNVKVHESSIL 449
             C +  ++V V +   L
Sbjct: 159 QNCDILLEDVFVPDDDRL 176


>06_02_0320 -
           14347195-14347443,14347573-14347674,14347747-14347851,
           14347938-14348084,14348171-14348290,14348743-14348878,
           14349198-14349328,14350854-14350928,14351040-14351139,
           14351213-14351385,14351474-14351581,14351674-14351791,
           14353477-14353970
          Length = 685

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
 Frame = +3

Query: 15  DPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTEYA--GSFCLTEPSSGSDAFALK 188
           D ++A  + +H  L  S    LGT+    K+L+     Y   G F +TE   GS+   ++
Sbjct: 151 DHSLAIKIGVHFFLWGSAIKFLGTKRHHDKWLSDT-ENYVIKGCFSMTELGHGSNVRGIE 209

Query: 189 TVAKKE--GEHYII-----SGSKMWISNS-DVAGVFLVMTNADPSKGYKGITCFIV---- 332
           TVA  +     ++I     S  K WI  + + A   +V      +   +G+  F+     
Sbjct: 210 TVATYDIKTREFVINTPCESAQKYWIGGAANHATHTIVFAQLHINGRNEGVHAFVAQIRD 269

Query: 333 --ERETPGLSVAKPENKLGIRASGTCMVHFDNVKVHESSIL 449
             E   P + +A   +K+G+       + F+N++V   ++L
Sbjct: 270 EHENVMPNIQIADCGHKIGLNGVDNGRIWFNNIRVPRENLL 310


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
 Frame = +3

Query: 15  DPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSGSDAFALKT 191
           D ++   + +  +L     + LGT++ + ++   +   +Y G F +TE   GS+  AL+T
Sbjct: 146 DISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTELHHGSNVQALQT 205

Query: 192 VAKKE--GEHYIIS-----GSKMWISNSDVAGVF--------LVMTNADPSKGYKGITCF 326
            A  +   + +II+       K WI N+ + G F        L +          GI  F
Sbjct: 206 TATFDPVTDEFIINTPNDGAIKWWIGNAALHGKFATVFARLILPLQGKGGDPADMGIHAF 265

Query: 327 IV---ERET----PGLSVAKPENKLGIRASGTCMVHFDNVKVHESSIL 449
           IV   + +T    PG+ +    +K+G+       + F +V++   ++L
Sbjct: 266 IVPIRDLDTNAVLPGIEINDCGHKIGLNGVDNGALRFRSVRIPRDNLL 313


>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
 Frame = +3

Query: 33  YVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSGSDAFALKTVA---K 200
           YVD+H  +        GTEEQ+KK+L      +  G +  TE   GS+   L+T A    
Sbjct: 103 YVDLHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTATFDP 162

Query: 201 KEGEHYI----ISGSKMWISNSDVAGVFLVMTNADPSKGYK-GITCFIVERET------- 344
           K  E  I    ++ SK W      A    V+     ++G   GI  FIV+  +       
Sbjct: 163 KTDEFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITEGKDYGIHGFIVQLRSLEDHSPL 222

Query: 345 PGLSVAKPENKLGIRASGTC---MVHFDNVKVHESSIL 449
           PG+++     K G  A  +    ++ FD+V++    +L
Sbjct: 223 PGVTLGDIGGKFGSGAYNSMDNGVLRFDHVRIPRDQML 260


>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 363 WQH*GPGFHVQR*SR*CPCNPWKDQHWSSLERLQRHQSSR 244
           W H  P F+++R S     + +   H+ +L+ LQ+H   R
Sbjct: 171 WAHVSPDFNIKRISASILESIYDKSHYDNLDTLQKHIQKR 210


>04_04_0329 +
           24449574-24449633,24450261-24450320,24450510-24450562,
           24450913-24450973,24451481-24451666,24451877-24451984,
           24452196-24453418,24453571-24454405
          Length = 861

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/34 (29%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 225 SGSKMWISNSDVAG-VFLVMTNADPSKGYKGITC 323
           +G K  +++SD+ G + +++ N DP++  K ++C
Sbjct: 708 AGKKEIMADSDMVGAIVVILENGDPAEKEKAVSC 741


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,270,866
Number of Sequences: 37544
Number of extensions: 245369
Number of successful extensions: 640
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)