Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28e07
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 75 7e-15
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.20
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.36
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 28 0.83
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 1.1
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 1.4
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 27 1.4
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 27 1.4
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 27 1.9
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 27 1.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 2.5
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 26 2.5
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 26 3.3
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 4.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 4.4
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 25 4.4
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 5.8
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 5.8
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 25 5.8
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 5.8
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 5.8
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 5.8
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 7.7
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 74.5 bits (175), Expect = 7e-15
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Frame = +3
Query: 177 VSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPAVKEA 356
+S LGE ++ F+DLNPDV AFQR FV E+RR + ER LRY+ +E+ +G+H+P
Sbjct: 1 MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLP 60
Query: 357 PRAPNPRE---IIDLEAHLEKTENEILELSHNAVNLKQNYL 470
P + E I D+ + + E + +L ++ L+ YL
Sbjct: 61 PSYESVLESSTIEDIIERITRLEARVRQLVESSQLLEARYL 101
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.9 bits (64), Expect = 0.20
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 165 AYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYIEAEVHK-DGV 332
A T++S + +A ++ FR+L+ + F+RK C MER+ + E+ K DGV
Sbjct: 934 ALTTISSMNQAVNMNFRELDKSIQEFKRK-------CQSMEREFK---TELRKLDGV 980
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.1 bits (62), Expect = 0.36
Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +3
Query: 216 DLNPDVNAFQRKFVNEVR-RCDEMERKLRYIEA-EVHKDGVHIPAVKEAPRAPNPREIID 389
+L D+ QR N++ + E++ +L+++E + + I A K+ + P+ E+
Sbjct: 889 ELKQDIT-LQRTVRNQLEIQTTELKERLKFMEERQENLQSKLIAANKDTTQNPDNVEVEA 947
Query: 390 LEAHLEKTENEILELSHNAVNLKQNYL 470
+ LE+T+ ++ N++Q YL
Sbjct: 948 ISIELERTKEKLRMAELEKSNIQQKYL 974
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 0.83
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -3
Query: 406 SKCASKSMISLGFGARGASLTAGMWTPSLCTSASMYRSLRSISSQRRT-SLTNFLWKAFT 230
S +S S S + +S T + +S+++ S+ SI++ T + L + T
Sbjct: 931 SLTSSVSTASSYIASSASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTT 990
Query: 229 SGFKSLNCTLPASPSSETEV*AAS 158
SG S + T+P+S SE+ +AS
Sbjct: 991 SGLTSSSSTIPSSTRSESNSESAS 1014
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 307 SMYRSLRSISSQRRTSLTNFLWKAFTSG 224
SMY+ L S+ Q LTN +W+A G
Sbjct: 467 SMYKVLHSLVFQNELGLTNTVWEAAHGG 494
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 297 RYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTENEI 425
R++ V K + P+V A NP+ + LE LE +N++
Sbjct: 30 RFLATSVKKPNLKKPSVNSANETKNPK-LASLEFQLENLKNDL 71
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 316 TSASMYRSL-RSISSQRRTSLTNFLWKAFTSGFKSLNCTLPASPSS 182
+SAS YRS + S+ T+ ++F + TSG + N P+S +S
Sbjct: 657 SSASSYRSYSQRASTPAVTAKSSFHYATPTSGLSNFNSVTPSSSAS 702
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 27.1 bits (57), Expect = 1.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 338 NVDAIFVHLSLDVPEFAFHFIATAHLVNEFPLESIYV 228
N D +F+H D P + ++ A + FP +S Y+
Sbjct: 25 NHDQVFLHNLPDAPRYTKSYMHNAEIYKCFPTKSNYI 61
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 324 DGVHIPAVKEAPRAPNPREIIDLEAHLEKTENEILELSHNAVNLKQN 464
D I + EA RE+I+ E H K E+E L L N LK++
Sbjct: 725 DSSMILSNSEAVSDEQERELIESEKHRMKLESENLHLQANIELLKKD 771
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 314 LSLDVPEFAFHFIAT-AHLVN 255
L +PEFA+HF+ T + LVN
Sbjct: 383 LGFQIPEFAYHFLQTCSRLVN 403
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 2.5
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = -3
Query: 448 TALCDSSRISFSVFSKCASKSMISLGF---GARGASLTAGMWTPSLCTSASMYRSLRSIS 278
++L SS ++ S + S S S A +SL + T S S+S+ S + S
Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142
Query: 277 SQRRTSLTNFLWKAFTSGFKSLNCTLPASPSS 182
S +SL + + + S N T A+P+S
Sbjct: 143 SITSSSLASSSTTSSSLASSSTNSTTSATPTS 174
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 389 VNDFPRVWSSGGFLDGGNVDAI 324
VNDFP++WS + G +D +
Sbjct: 229 VNDFPKIWSKLSKVRHGRIDFV 250
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 389 VNDFPRVWSSGGFLDGGNVDAI 324
VNDFP VWS + G +D +
Sbjct: 225 VNDFPTVWSKLKDVHNGRIDFV 246
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 4.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 13 ERDERCTCRQQHSVH 57
+ +E C+C + HSVH
Sbjct: 419 KHEEHCSCHEDHSVH 433
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 4.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 332 PHSRRQGSPPSSKPEGNH*LGGTFRENRKRNSRAVTQRGQ 451
P R++G PP +KP+ L GT EN+ +R RG+
Sbjct: 308 PVKRKRGRPPLNKPK---ILFGTSTENKIDENRPKRGRGR 344
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 179 DGGIGRLGLNEELAQSHLLAPEHSP 105
DGG+G+ L +L QSH + E+ P
Sbjct: 16 DGGVGKSALTIQLIQSHFV-DEYDP 39
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 5.8
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 237 AFQRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPAVKEAPRAPNPR--EIIDLEAHLEK 410
A ++K + +R+ +++ LR I +H+ + + V + +A R +II+ AHLEK
Sbjct: 701 AEKQKTEHAMRQKEKLLTHLRSIM--LHRKSI-VTKVDKQNKAKTQRCKDIINFHAHLEK 757
Query: 411 TENEILELS 437
E + +E S
Sbjct: 758 EEKKRIERS 766
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 286 NANSGTSRLRCTKMASTFPPSRKPP 360
N + GT TK STFP PP
Sbjct: 1223 NVSQGTDSRLVTKPTSTFPSPPSPP 1247
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.0 bits (52), Expect = 5.8
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 338 NVDAIFVHLSLDVPEFAF--HFIATAHLVNEFPLESIYVRI*ISELHAA 198
N+ IF L + +F+ LVNE E ++ IS LHAA
Sbjct: 547 NISCIFYELDYKISTIVLLQNFLTQIALVNEEQKEGESQKVTISTLHAA 595
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 310 ASMYRSLRSISSQRRTSLTNFLWKAFTSGFKSLNCT 203
+++YR S+S Q RTS N + SG L CT
Sbjct: 468 SNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCT 503
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +3
Query: 147 FIQPEAAYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYIEAEVHK 323
FI + +S+ G++ V DLN Q+ ++ + K R ++A +HK
Sbjct: 357 FINHDGLDSSLDLDGDSYMVDENDLNLAKKRKQKALIDRTTTIENGSSKRRLLQASIHK 415
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 317 AQRWRPHSRRQGSPPSSKPEGNH*LGGTFRENRKRNSRAVTQRGQFE 457
++ W P + QGS SS+P + T + + +S T+ G F+
Sbjct: 11 SEEWIPQPQEQGSDNSSEPPTTSNVNNT-QSTGRGSSGTSTEHGTFK 56
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 24.6 bits (51), Expect = 7.7
Identities = 24/95 (25%), Positives = 42/95 (44%)
Frame = +3
Query: 114 FRSEEMALCQLFIQPEAAYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERK 293
F SEE+AL +L PE+ SEL + Q+ L P E+R +++
Sbjct: 211 FSSEELALRKLADDPESWRKLASELRKKSRQQY--LKPRAQQQLEILRREIRDEEQLFAG 268
Query: 294 LRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEA 398
+ +AE+ + + KE R R+ ++ +A
Sbjct: 269 EKLTQAEIRE----LEKKKELLRIAEERQRLEKQA 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,506
Number of Sequences: 5004
Number of extensions: 41393
Number of successful extensions: 147
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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