Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e06
         (473 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA...   118   3e-27
X04228-2|CAA27809.1|   96|Drosophila melanogaster protein ( Dros...    28   5.6  
X04227-2|CAA27806.1|   96|Drosophila melanogaster URF 2 protein.       28   5.6  
AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p pro...    28   7.4  
AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    28   7.4  
AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein ...    27   9.8  

>AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA
           protein.
          Length = 69

 Score =  118 bits (285), Expect = 3e-27
 Identities = 49/62 (79%), Positives = 56/62 (90%)
 Frame = +1

Query: 100 MSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 279
           MSEA FDEY++YNFDHDKHIF+GH GKQR K+EA+EHTNHFDPSGHSRKI+TKLMN  +N
Sbjct: 1   MSEAHFDEYEHYNFDHDKHIFSGHSGKQRNKREANEHTNHFDPSGHSRKILTKLMNTNNN 60

Query: 280 KK 285
            K
Sbjct: 61  NK 62


>X04228-2|CAA27809.1|   96|Drosophila melanogaster protein (
           Drosophila mRNA forCc gene from dopa decarboxylase gene
           cluster;  mapping2.0 kb from the 5'end of Ddc gene.  ).
          Length = 96

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 347 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 439
           +I  P  RRT   R+P   S GCS   S +HP
Sbjct: 11  SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42


>X04227-2|CAA27806.1|   96|Drosophila melanogaster URF 2 protein.
          Length = 96

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 347 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 439
           +I  P  RRT   R+P   S GCS   S +HP
Sbjct: 11  SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42


>AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p
           protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 145 HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 300
           HD  I  GH G  RT  +   H    + + H ++ + +    + +K T++TK
Sbjct: 34  HDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 85


>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 145 HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 300
           HD  I  GH G  RT  +   H    + + H ++ + +    + +K T++TK
Sbjct: 490 HDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 541


>AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein
           protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 145 HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 300
           HD  I  GH G  RT  +   H    + + H ++ + +    + +K T++TK
Sbjct: 490 HDDLIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 541


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,926,991
Number of Sequences: 53049
Number of extensions: 411162
Number of successful extensions: 1229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)