Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e03
         (568 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY607366-1|AAT01984.1|  113|Homo sapiens immunoglobulin heavy ch...    34   0.40 
Y14937-1|CAA75154.1|  113|Homo sapiens IgM rheumatoid factor imm...    31   3.7  
AM233791-1|CAJ84060.1|  117|Homo sapiens immunoglobulin heavy ch...    31   3.7  
AF471491-1|AAQ05666.1|  123|Homo sapiens Ig heavy chain variable...    31   3.7  
AF174032-1|AAD53778.1|  137|Homo sapiens immunoglobulin heavy ch...    30   4.9  
AJ244992-1|CAB44126.1|  121|Homo sapiens immunoglobulin mu heavy...    30   6.5  
AF235769-1|AAK13899.1|   59|Homo sapiens immunoglobulin heavy ch...    29   8.6  

>AY607366-1|AAT01984.1|  113|Homo sapiens immunoglobulin heavy chain
           CDR3 protein.
          Length = 113

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -1

Query: 538 EFEIKINSRYVSDTLMYYKQLGSTKNLLYYRQAGLTTLN 422
           +F +K++S   +DT +YY   G+T NL Y+ Q  L T++
Sbjct: 74  QFSLKLSSVTAADTAVYYCARGTTLNLDYWGQGTLVTVS 112


>Y14937-1|CAA75154.1|  113|Homo sapiens IgM rheumatoid factor
           immunoglobulin heavy chain protein.
          Length = 113

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -1

Query: 541 EEFEIKINSRYVSDTLMYYKQLGSTK---NLLYYRQAG 437
           ++F +K+ S   +DT +YY   GST+   N+LYY   G
Sbjct: 69  KQFSLKLTSVTAADTAVYYCARGSTRGLVNILYYWSHG 106


>AM233791-1|CAJ84060.1|  117|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 117

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 538 EFEIKINSRYVSDTLMYYKQLGSTKNLLYYRQAGLTTLN 422
           +F +K++S   +DT +YY   GS+ +  Y+ Q  L T++
Sbjct: 78  QFSLKLSSVIAADTAVYYCARGSSSSADYWGQGTLVTVS 116


>AF471491-1|AAQ05666.1|  123|Homo sapiens Ig heavy chain variable
           region, VH3 family protein.
          Length = 123

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 547 ALEEFEIKINSRYVSDTLMYYKQLGSTKNLLYY 449
           A    E+++NS  V DT +YY   GS  N  YY
Sbjct: 75  AKNSLELQVNSLRVEDTAVYYCARGSYSNFDYY 107


>AF174032-1|AAD53778.1|  137|Homo sapiens immunoglobulin heavy chain
           variable region precursor protein.
          Length = 137

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 550 KALEEFEIKINSRYVSDTLMYYKQLGS-TKNLLYYRQAGLTTLN 422
           KA  +F +K+NS   +DT +YY   G  ++   ++ + GL T++
Sbjct: 92  KAANQFTLKLNSVTAADTAIYYCATGDWSRRFEHWGRGGLVTVS 135


>AJ244992-1|CAB44126.1|  121|Homo sapiens immunoglobulin mu heavy
           chain variable region protein.
          Length = 121

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 538 EFEIKINSRYVSDTLMYYKQLGSTKNLLYY 449
           +F +K++S   +DT +YY   G T N +YY
Sbjct: 77  QFSLKLSSVTAADTAVYYCARGRTWNYVYY 106


>AF235769-1|AAK13899.1|   59|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 59

 Score = 29.5 bits (63), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 538 EFEIKINSRYVSDTLMYYKQLGSTKNLLYYRQ 443
           +F +K++S   +DT +YY   GS  N +Y+ Q
Sbjct: 28  QFSLKLSSVTAADTAVYYCARGSGSNYVYWGQ 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,885,118
Number of Sequences: 237096
Number of extensions: 921940
Number of successful extensions: 4252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4252
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)