Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e02
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    26   3.6  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   6.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   8.3  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   8.3  

>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 581 VGSXYRYVAS*CGTTSEPMPGFLKIYMLCTT 489
           VG+ + +V S C     P  GFL  Y+L TT
Sbjct: 157 VGTGFSFVWSACVAILFPFVGFLVTYVLSTT 187


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 267 FLCCRERCSLLYVWQV 220
           FLCC     LLY+W +
Sbjct: 551 FLCCIVSTGLLYIWNI 566


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 7   SPSTADAPSQSCVATQYRRYLNSFCFCKFIASIMHDSIKSQLITDGYAILEDFL 168
           S +  DAPSQ  +      Y+N      F   ++++ ++S++    + +L+  L
Sbjct: 125 STTYEDAPSQLDILDNVVEYMNKTASQDFEDEVINEGLESEIDGSSHNLLDSIL 178


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 349 GNLTVEPEISLNKVGHALHL-LHPIFRCYTYSERVKSICKEL 471
           G L    ++    V  A HL  HP+FR +T  E    IC  L
Sbjct: 202 GTLYTITDVEELHVWMAQHLDAHPLFRRFTKEEEENDICVTL 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,527
Number of Sequences: 5004
Number of extensions: 48258
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)