Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28e02
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.9  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   5.2  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   5.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   5.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   6.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 516 LKNIHALHHSRLDKAKLFAN 457
           LKN  AL+H + DK  L  N
Sbjct: 436 LKNDEALNHDQPDKYDLIGN 455


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 493 PQPAR*SQALCKCSSRVHYTCNI 425
           PQP    +AL KC +R   TCN+
Sbjct: 701 PQPI--GKALSKCHNRNVTTCNM 721


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 301 NDKIRCFFEEGAIDADGN 354
           N+  +C  +EG   A+GN
Sbjct: 45  NNYFKCLMDEGRCTAEGN 62


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 301 NDKIRCFFEEGAIDADGN 354
           N+  +C  +EG   A+GN
Sbjct: 45  NNYFKCLMDEGRCTAEGN 62


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 301 NDKIRCFFEEGAIDADGN 354
           N+  +C  +EG   A+GN
Sbjct: 45  NNYFKCLMDEGRCTAEGN 62


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 284 LSFKCVFSVVENVALSSMSGKFSVNSNPAALIS 186
           LS  C  + +  +A+  ++G   V S+P  LIS
Sbjct: 65  LSLLCADTRLNKLAVFIVAGAVGVFSSPTILIS 97


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 463 CKCSSRVHYTCNI*KSDVGDAVRDR 389
           CK + +VH+T +   +  G+ + DR
Sbjct: 405 CKINRKVHHTTSSSSAAGGEGLADR 429


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +1

Query: 244 ATFSTTEKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTVEPEISLNK 387
           A+ STT   ++  ++ LE  DK      +  ++   +   +P+++  K
Sbjct: 667 ASHSTTLTVNVPPRWILEPTDKAFAQGSDARVECKADGFPKPQVTWKK 714


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 187 HHIPQHEENLL 155
           HH P  E+NLL
Sbjct: 796 HHYPTREDNLL 806


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,635
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)