Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d24
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.4  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   8.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 269 GASLVAVAVDSGEVAAVAFNKLQVSSSTEKPFFE 370
           G  LV   +D  +V  +  + + +  STE  FF+
Sbjct: 86  GPKLVICLIDPRDVEIILSSNVYIDKSTEYRFFK 119


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 98  DGKYKIVSLTAATFPGALDIIREDFCQDESV 190
           DG+ +I        PG+ D  R DF  + S+
Sbjct: 657 DGRTEIDVAIKTLKPGSADKARNDFLTEASI 687


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 123 KDTILYFPSSVVNHSILLKRLRTRA 49
           KD   YF    ++H IL+K+ +  A
Sbjct: 12  KDFGTYFQQYCLHHKILIKKNKCNA 36


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 474 IAAXKSCFSEHNVHIETENLEPFYA 548
           I++  S FS+ N+H+      P Y+
Sbjct: 128 ISSRDSAFSDKNIHVSFLRTVPPYS 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,749
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)