Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d23
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    27   1.1  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   3.4  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   3.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    25   5.9  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   5.9  

>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 44  LLCSVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMD 208
           LL  +  G N    P  K G+ SAS++ + AW++  K  S   R   T  E   D
Sbjct: 496 LLQELISGINQKQKPSHKRGSLSASHKRDAAWSLLYKATSNKSRPTTTSTELKTD 550


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 213 VRSIIASGLVWTSRSHMLSPLSLTFQAPS-TWYEAD 109
           +  +I++G  W++ S +   ++  F+APS   YEAD
Sbjct: 74  IMGVISTGFAWSAYSLVKKYIAPMFRAPSQNAYEAD 109


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 53  SVAYGSNLTFPPGFKFGAASASYQVEGAWNVSDKGESIW 169
           S  +G++L+F        AS+S  +E     SDK  SIW
Sbjct: 298 SSCFGNSLSFAASNGVDGASSSQVLENILVASDKEFSIW 336


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 194 EAIM-DLTNGDVTCDSYHLWERDIEMATELGLHFYRFSLSWPRLM 325
           EAIM DL   D+  D     E D+ +A     HF+ FS  +PR +
Sbjct: 299 EAIMSDLNFEDI--DEKKFEEIDLRLACCFESHFFAFSQHYPRYL 341


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +3

Query: 402 RGLNLLLPFFIGIY--PXSLQDLGGW 473
           R L+ +LPFF GIY  P S     GW
Sbjct: 114 RVLDSMLPFFTGIYGNPHSRTHAYGW 139


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 253 ERHRNGNGAWSTFLP 297
           ERH++ N  WST LP
Sbjct: 141 ERHKSTNDTWSTNLP 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,662
Number of Sequences: 5004
Number of extensions: 43148
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)