Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d23
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...   113   5e-26
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...   110   6e-25
Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    27   5.3  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    27   5.3  
AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein ...    27   5.3  
Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score =  113 bits (273), Expect = 5e-26
 Identities = 52/134 (38%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
 Frame = +2

Query: 80  FPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMDLTNGDVTCDSYHLWERD 259
           FP  FK   A+A+YQ+EGA +++ +G S WD  +  +P  I+D ++ D++CD    ++ D
Sbjct: 7   FPKNFKLATATAAYQIEGAKDLNGRGFSTWDA-IRLEPGRILDNSDPDLSCDGLLKYKED 65

Query: 260 IEMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLLDKGIEPLVTIFHWD 439
           + +  E+G+  YRFS+SW R++P G  + I+E+G K+Y +L   L +  IEP+VT+FH+D
Sbjct: 66  VALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHFD 125

Query: 440 LPPXF--AGSWWLD 475
           +P      G+ WL+
Sbjct: 126 MPLAIYDNGTAWLN 139


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score =  110 bits (264), Expect = 6e-25
 Identities = 50/135 (37%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
 Frame = +2

Query: 80  FPPGFKFGAASASYQVEGAWNVSDKGESIWDRLVHTKPEAIMDLTNGDVTCDSYHLWERD 259
           FP  F+   A+A+YQ+EGA N+  +G S WD  + ++   I D ++ D++C+    ++ D
Sbjct: 7   FPKNFQLATATAAYQIEGAKNLDGRGFSTWDS-IRSENGRIHDNSDPDLSCEGRLKYKED 65

Query: 260 IEMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLLDKGIEPLVTIFHWD 439
           + + +++G+  YRFS+SW R++P G    I+EDG ++Y ++   L D GIEP+VT+FH+D
Sbjct: 66  VALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHFD 125

Query: 440 LPPXF--AGSWWLDE 478
           +P      G+ WL++
Sbjct: 126 MPLSIYDNGTSWLNK 140


>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 263 EMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLL 397
           E+  EL  H +  SL W     TG   ++ + G    NN+++ +L
Sbjct: 303 ELEVELFKHLHSLSLRWHLSRKTGQVLRVMDRGTSSVNNILNYIL 347


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 263 EMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLL 397
           E+  EL  H +  SL W     TG   ++ + G    NN+++ +L
Sbjct: 303 ELEVELFKHLHSLSLRWHLSRKTGQVLRVMDRGTSSVNNILNYIL 347


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 263 EMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLL 397
           E+  EL  H +  SL W     TG   ++ + G    NN+++ +L
Sbjct: 303 ELEVELFKHLHSLSLRWHLSRKTGQVLRVMDRGTSSVNNILNYIL 347


>AF490977-1|AAQ06435.1|  801|Caenorhabditis elegans ABC6 protein
           protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 263 EMATELGLHFYRFSLSWPRLMPTGFSNKISEDGQKYYNNLIDGLL 397
           E+  EL  H +  SL W     TG   ++ + G    NN+++ +L
Sbjct: 303 ELEVELFKHLHSLSLRWHLSRKTGQVLRVMDRGTSSVNNILNYIL 347


>Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical
           protein F21D5.3 protein.
          Length = 713

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 281 GLHFYRFSLSWPRLMPTGFSNKISED 358
           G HFY   + WP    +GF +++++D
Sbjct: 553 GHHFYVMKVGWPSYNGSGFIDQMNQD 578


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,371
Number of Sequences: 27780
Number of extensions: 238268
Number of successful extensions: 523
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)