Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d23
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.0  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 78  PSPRALSSVQHQLHTK 125
           PSP  L+S  HQ H K
Sbjct: 44  PSPSLLTSQPHQDHNK 59


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 143 VSDKGESIWD 172
           V +KG+SIWD
Sbjct: 311 VIEKGQSIWD 320


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 410 EPLVTIFHWDLPPXFAGSWWLDE 478
           E  V++ H   PP  A   WL E
Sbjct: 458 EKNVSLLHLIFPPDIAKRLWLGE 480


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 250 PKMIRVAGHVSISEIHYRFRFGVD*PIPYAF 158
           PK + +  + ++S     + +G D P  +AF
Sbjct: 280 PKHMLIEAYTNLSMTMKYYDYGADFPFNFAF 310


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 31 YPRIIHCYH 5
          YP ++H YH
Sbjct: 17 YPMVVHVYH 25


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
          protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 31 YPRIIHCYH 5
          YP ++H YH
Sbjct: 17 YPMVVHVYH 25


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -1

Query: 250 PKMIRVAGHVSISEIHYRFRFGVD*PIPYAF 158
           PK + +  + ++S     + +G D P  +AF
Sbjct: 280 PKHMLIEAYTNLSMTMKYYDYGADFPFNFAF 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,816
Number of Sequences: 438
Number of extensions: 3240
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)