Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d20
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    56   1e-09
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   3.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   3.9  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    24   5.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    23   9.0  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    23   9.0  

>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +1

Query: 121 VRNYADA-PKGDEMALTFAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGV 297
           +R YA A  K +++ L+ A   +  Y+K  V Q+D+P+  G  GIL  HVP +  L+PGV
Sbjct: 18  IRGYAQAVQKNEKLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGV 77

Query: 298 VTILENDGKQN 330
           +++ +    ++
Sbjct: 78  ISVTDESSNKS 88


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 205 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDG 321
           V+ +++VP  +    I P  VP L  L       LE DG
Sbjct: 429 VLPEVNVPPITTFSIIRPSRVPALRFLAAPATRTLERDG 467


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 202 VCHKRPYYPQRRSMPFRHLWEHLHSYVLEADEL 104
           +C K  ++PQ RS  F+ L+ +L  + ++  +L
Sbjct: 515 LCMKVAHFPQFRSCVFQRLFTNLQHWDVKVQQL 547


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 217 FV*QLVCHKRPYYPQRRSMPF 155
           F  Q      PYYP+R S PF
Sbjct: 330 FTDQFSSTMHPYYPKRTSTPF 350


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 217 IDVPSFSGAFGILPKHVPTLAVLRPGVVT 303
           +D PS SG F  LPK    +   R   ++
Sbjct: 620 VDSPSLSGGFFALPKQTEAIFHARTSFIS 648


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 117  KPTSYISDYTTECQ 76
            K T YISDY TE Q
Sbjct: 996  KLTKYISDYKTEIQ 1009


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,235,778
Number of Sequences: 5004
Number of extensions: 22070
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)