Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d20
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0467 - 18479199-18479543,18481145-18481417                       40   5e-04
11_05_0074 + 18850567-18851095,18851249-18851274,18851353-188516...    27   2.7  
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    27   3.6  
03_01_0283 + 2193632-2195182                                           27   4.7  
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467...    26   6.2  
09_03_0061 - 11967727-11967765,11967872-11967910,11967996-119682...    26   8.3  
06_01_0036 + 364316-365758                                             26   8.3  
03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208...    26   8.3  

>07_03_0467 - 18479199-18479543,18481145-18481417
          Length = 205

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +1

Query: 115 LQVRNYADAPKGDEMALTFAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPG 294
           +Q R    A    ++ + F    K       V  + VP+ +G  G+LP HV T+A L+PG
Sbjct: 61  MQPRPPTPAAIPSKLTVNFVLPYKSEIANKEVDMVIVPATTGQMGVLPGHVSTIAELKPG 120

Query: 295 VVTILEND 318
           V+++ E +
Sbjct: 121 VLSVHEGN 128


>11_05_0074 +
           18850567-18851095,18851249-18851274,18851353-18851645,
           18851898-18852699,18852874-18853022,18853105-18853393,
           18853479-18853517,18853623-18853661
          Length = 721

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 205 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI 306
           ++ Q D   F G    + KH P +A L P VVTI
Sbjct: 533 ILGQHDGKPFLGPTNYIVKHAPEVAFLDPQVVTI 566


>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 187 PYYPQRRSMPFRHLWEHLHSYV 122
           P+ P+ + +P  HLW H+  +V
Sbjct: 308 PFGPRDKYIPKEHLWPHIQEFV 329


>03_01_0283 + 2193632-2195182
          Length = 516

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 109 RRLQVRNYADAPKGDEMALTF-AAGNKVF 192
           R +   N+A+ PKGDE A  F   GN +F
Sbjct: 89  RHIFTSNFANYPKGDEYAEIFDVLGNGIF 117


>03_03_0149 +
           14843880-14844145,14846501-14846561,14846608-14846720,
           14848448-14848540,14849578-14849793,14853773-14856023
          Length = 999

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 110 VGFKYVTMQMLPKVTKWH*PSLRVIRSFMTNXLSNKLM 223
           + +KY+TM +     +W  PS+R + +F T     +++
Sbjct: 166 LAYKYITMGIPQWFPRWAQPSMRYVVTFTTQVPMRRIL 203


>09_03_0061 -
           11967727-11967765,11967872-11967910,11967996-11968284,
           11968367-11968515,11968693-11969469
          Length = 430

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 205 VVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTI--LEND 318
           ++++ D   F G    + KH P +A L P VVT+  L+ND
Sbjct: 243 ILREHDGKPFLGPTNYI-KHAPEVAFLDPQVVTVTNLQND 281


>06_01_0036 + 364316-365758
          Length = 480

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 235 SGAFGILPKHVPTLAVLRPGVVTILEN 315
           SGAF   P H+  +  LRP VV  +++
Sbjct: 337 SGAFSPAPAHLRVVKELRPAVVVCVDH 363


>03_01_0269 +
           2080338-2080508,2081086-2081335,2081432-2082648,
           2082933-2083083,2083247-2083563
          Length = 701

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 160 ALTFAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTL 276
           AL F A  K+   K  +K+  + ++S A  + P+HVP+L
Sbjct: 590 ALAFHATGKLHEAKGFLKEA-LRAYSTALDLEPRHVPSL 627


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,708,803
Number of Sequences: 37544
Number of extensions: 137764
Number of successful extensions: 293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)