Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d20
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...    67   3e-12
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    30   0.45 
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    30   0.45 
AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical ...    28   1.8  
AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical ...    28   1.8  
AC084158-14|AAK68557.2|  207|Caenorhabditis elegans Hypothetical...    27   2.4  
AC084158-13|AAK68570.1|  337|Caenorhabditis elegans Hypothetical...    27   2.4  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    27   3.2  
Z46266-11|CAA86417.1| 1170|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z37979-2|CAA86035.1| 1170|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AB011278-1|BAA24958.1|  280|Caenorhabditis elegans GAP-2-2 protein.    27   4.2  
AB011277-1|BAA24957.1|  269|Caenorhabditis elegans GAP-2-1 protein.    27   4.2  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    26   5.5  
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    26   5.5  
Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z50045-2|CAA90363.2|  485|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF045642-12|AAD34648.1|  348|Caenorhabditis elegans Hypothetical...    25   9.7  

>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = +1

Query: 151 DEMALTFAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILENDG 321
           +E+ LTFA+ +   +   VVKQ+DVP+ +G  G+L  HVPT+ VL+PGVV++  N+G
Sbjct: 29  EELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIGVLKPGVVSVTTNEG 85


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 139 APKGDEMALTFAAGNKVFYDKXVVKQIDVPSF 234
           A KGD++ +  A GN+V   K +V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 139 APKGDEMALTFAAGNKVFYDKXVVKQIDVPSF 234
           A KGD++ +  A GN+V   K +V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3b protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 181 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 74
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 57  YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 95


>AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3a protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 181 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 74
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 107 YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 145


>AC084158-14|AAK68557.2|  207|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.13 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 111 TSYISDYTTECQCHSDYLSFL 49
           T +   YT +CQC+S  L FL
Sbjct: 100 TDFCKKYTNDCQCYSMRLGFL 120


>AC084158-13|AAK68570.1|  337|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.25 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 111 TSYISDYTTECQCHSDYLSFL 49
           T +   YT +CQC+S  L FL
Sbjct: 170 TDFCKKYTNDCQCYSMRLGFL 190


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -1

Query: 165 QCHFVTFGSICIVTYLKPTSYISDYTTECQCHSDYLSFLIQIIT 34
           QC F  +G  C  T    TSY+  +       SDY  +   I T
Sbjct: 163 QCPFDYYGDKCQTTRSVQTSYVGCFDDSSASFSDYYVYSTTITT 206


>Z46266-11|CAA86417.1| 1170|Caenorhabditis elegans Hypothetical
           protein ZK899.8b protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 169 FAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 300
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 75


>Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 169 FAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 300
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 132


>Z37979-2|CAA86035.1| 1170|Caenorhabditis elegans Hypothetical
           protein ZK899.8b protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 169 FAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 300
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 75


>Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 169 FAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 300
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 132


>Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 169 FAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 300
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 132


>AB011278-1|BAA24958.1|  280|Caenorhabditis elegans GAP-2-2 protein.
          Length = 280

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 169 FAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 300
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 75


>AB011277-1|BAA24957.1|  269|Caenorhabditis elegans GAP-2-1 protein.
          Length = 269

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 169 FAAGNKVFYDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVV 300
           F AG  +  ++ V    D  +F+  +G+LP+H P+  +  P  +
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSPPITGPHTI 132


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 156 FVTFGSICIVTYLKPTSYISDYTTECQCHSDYLSFLIQ-IITXGN--LLXAIFFP 1
           F  F  IC +        I   T +   HS  +SFLI  ++  GN  ++ A++FP
Sbjct: 267 FAFFTQICSIFLAFSLDLIPFSTAKTVIHSHIISFLIGFLLLFGNEMMITALYFP 321


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
           protein Y47D3A.29 protein.
          Length = 1428

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 193 YDKXVVKQIDVPSFSGAFGILPKHVPTLAVLRPGVVTILEND 318
           Y K   +Q+ VP  +   G+LP+ +  L   R  V ++++++
Sbjct: 859 YSKDSDEQLSVPQSTDIEGVLPREIRKLVECRRDVKSLMKSE 900


>Z83127-5|CAB05628.2|  575|Caenorhabditis elegans Hypothetical
           protein T23F6.5 protein.
          Length = 575

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 78  GIPWCNQKCSSSASST*LCRCSQR*RNGIDLRC 176
           G+ +C QKC +  +S    RC ++  N +  +C
Sbjct: 316 GLAYCRQKCRALDASESSARCLRQRENPLIKKC 348


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 60  DNQNGTGIPWCNQKCSSSASST*LCRCSQR*RNGIDLRCG 179
           +N N   IP C Q+C SS  ++   +C Q+ +   + +CG
Sbjct: 55  NNNNVQCIPVCLQQCQSSCQTS---QCIQQCQPACNQQCG 91


>Z50045-2|CAA90363.2|  485|Caenorhabditis elegans Hypothetical
           protein F38B2.3 protein.
          Length = 485

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 225 YINLFDNXFVIKDLITRSEGQCHFVTFGS 139
           ++ ++D    I  +ITR  GQ ++VT  S
Sbjct: 346 FLKIYDGNSTIDPIITRISGQENYVTINS 374


>AF045642-12|AAD34648.1|  348|Caenorhabditis elegans Hypothetical
           protein C17H12.8 protein.
          Length = 348

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 228 WYINLFDNXFVIKDLI 181
           WY ++FDN FVI+  I
Sbjct: 178 WYSDIFDNYFVIEGYI 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,914,416
Number of Sequences: 27780
Number of extensions: 131698
Number of successful extensions: 276
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)