Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d18
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132...    32   0.16 
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    28   2.6  
09_02_0076 - 3959572-3960279                                           27   4.5  

>02_01_0195 +
           1327071-1327187,1328060-1328203,1328340-1328431,
           1329393-1329579,1329676-1329831,1329959-1330012
          Length = 249

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 231 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFXAGFLSAIVGAGLMXMLIATP 401
           ++ P V+ HLK VY TL +   +++ G Y+ +      G L+ +   G +  L + P
Sbjct: 28  QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVP 83


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 189 NTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM-FTRFXAGFLSAI 362
           N ++    + + +N+     +Q +K + A+L  TC S S   Y D+   R+    +SAI
Sbjct: 422 NNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAI 480


>09_02_0076 - 3959572-3960279
          Length = 235

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 183 NMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMT 290
           N+N+   Q F N+FQ+R++  VR  L N    L+ T
Sbjct: 147 NLNSDVAQDFFNNFQDRIDYAVRHALINQSGVLVNT 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,728,367
Number of Sequences: 37544
Number of extensions: 162722
Number of successful extensions: 279
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)