Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d18
         (413 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058377-1|AAL13606.1|  245|Drosophila melanogaster GH14327p pro...    48   5e-06
AE014296-1419|AAN12018.1|  237|Drosophila melanogaster CG7188-PB...    48   5e-06
AE014296-1418|AAF50446.1|  245|Drosophila melanogaster CG7188-PA...    48   5e-06
AY122148-1|AAM52660.1|  695|Drosophila melanogaster LD03368p pro...    28   5.6  
AE013599-2165|AAS64841.1|  695|Drosophila melanogaster CG8400-PB...    28   5.6  
AE013599-2164|AAF58073.1|  695|Drosophila melanogaster CG8400-PA...    28   5.6  
BT021954-1|AAX51659.1|  657|Drosophila melanogaster AT15161p pro...    27   9.8  
AE014296-3526|AAF51715.2|  650|Drosophila melanogaster CG32437-P...    27   9.8  

>AY058377-1|AAL13606.1|  245|Drosophila melanogaster GH14327p
           protein.
          Length = 245

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 189 NTIN--FQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFXAGFLSAI 362
           N IN  FQTF+N   +R EP VR+HL  VY  L  T  + + G  + M      G L+A+
Sbjct: 6   NYINDRFQTFMNGLGDRYEPYVREHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAV 65

Query: 363 VGAGLMXMLIATPDNGK 413
               L+  L    D+GK
Sbjct: 66  ATLVLVLGLHFYKDDGK 82


>AE014296-1419|AAN12018.1|  237|Drosophila melanogaster CG7188-PB,
           isoform B protein.
          Length = 237

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 189 NTIN--FQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFXAGFLSAI 362
           N IN  FQTF+N   +R EP VR+HL  VY  L  T  + + G  + M      G L+A+
Sbjct: 6   NYINDRFQTFMNGLGDRYEPYVREHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAV 65

Query: 363 VGAGLMXMLIATPDNGK 413
               L+  L    D+GK
Sbjct: 66  ATLVLVLGLHFYKDDGK 82


>AE014296-1418|AAF50446.1|  245|Drosophila melanogaster CG7188-PA,
           isoform A protein.
          Length = 245

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 189 NTIN--FQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFXAGFLSAI 362
           N IN  FQTF+N   +R EP VR+HL  VY  L  T  + + G  + M      G L+A+
Sbjct: 6   NYINDRFQTFMNGLGDRYEPYVREHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAV 65

Query: 363 VGAGLMXMLIATPDNGK 413
               L+  L    D+GK
Sbjct: 66  ATLVLVLGLHFYKDDGK 82


>AY122148-1|AAM52660.1|  695|Drosophila melanogaster LD03368p
           protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +3

Query: 138 LLKSLFKDPSESKKKNMNTINFQTFVNS--FQNRL--EPPVRQHLKNVYA-TLMMTCVSA 302
           L  S+  DP+ S+  N N I F    N   +Q RL  E  V Q  + ++A T +  C  A
Sbjct: 122 LTSSINLDPASSQNNNQNVITFNIHFNQQLYQLRLPSEATVEQLKRKIFAETSVPVCRQA 181

Query: 303 SAG 311
             G
Sbjct: 182 IRG 184


>AE013599-2165|AAS64841.1|  695|Drosophila melanogaster CG8400-PB,
           isoform B protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +3

Query: 138 LLKSLFKDPSESKKKNMNTINFQTFVNS--FQNRL--EPPVRQHLKNVYA-TLMMTCVSA 302
           L  S+  DP+ S+  N N I F    N   +Q RL  E  V Q  + ++A T +  C  A
Sbjct: 122 LTSSINLDPASSQNNNQNVITFNIHFNQQLYQLRLPSEATVEQLKRKIFAETSVPVCRQA 181

Query: 303 SAG 311
             G
Sbjct: 182 IRG 184


>AE013599-2164|AAF58073.1|  695|Drosophila melanogaster CG8400-PA,
           isoform A protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +3

Query: 138 LLKSLFKDPSESKKKNMNTINFQTFVNS--FQNRL--EPPVRQHLKNVYA-TLMMTCVSA 302
           L  S+  DP+ S+  N N I F    N   +Q RL  E  V Q  + ++A T +  C  A
Sbjct: 122 LTSSINLDPASSQNNNQNVITFNIHFNQQLYQLRLPSEATVEQLKRKIFAETSVPVCRQA 181

Query: 303 SAG 311
             G
Sbjct: 182 IRG 184


>BT021954-1|AAX51659.1|  657|Drosophila melanogaster AT15161p
           protein.
          Length = 657

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 4   CHILYSAERKLFVCFI 51
           CH++ SA+R L+ CF+
Sbjct: 374 CHLVSSAQRALYACFV 389


>AE014296-3526|AAF51715.2|  650|Drosophila melanogaster CG32437-PA
           protein.
          Length = 650

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 4   CHILYSAERKLFVCFI 51
           CH++ SA+R L+ CF+
Sbjct: 374 CHLVSSAQRALYACFV 389


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,545
Number of Sequences: 53049
Number of extensions: 305184
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)