Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d16
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...   108   6e-25
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   1.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   7.0  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   7.0  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    25   7.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   9.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.3  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score =  108 bits (259), Expect = 6e-25
 Identities = 59/137 (43%), Positives = 76/137 (55%)
 Frame = +1

Query: 112 LYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXXXX 291
           ++C+IS         S  SG V+E+R+IE+ I E   DP+  +E  +EDL          
Sbjct: 1   MFCSISGETPKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVR 60

Query: 292 XXXXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTK 471
               SATS+PA L   Q+EWD++ L  F  R+ L   +QELS ALY  DAA RVI+RLTK
Sbjct: 61  PRPPSATSLPALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTK 120

Query: 472 EVTAAREALATLKPQAG 522
           E   AREALA      G
Sbjct: 121 ERDEAREALAKFSDNIG 137


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 175 VFERRIIEKYIIENGVDPINGKELRVEDL 261
           +F+ R I  ++ ++G +PING++  + DL
Sbjct: 67  IFDFRFIVPWLRKHGTNPINGQKASMSDL 95


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 110 LSIVRY--QMKFPKYQWYHLRQELCLKG 187
           +S+V Y  Q+ FPK  W H+   L L G
Sbjct: 664 VSVVVYLLQISFPKSSWKHVNPALLLGG 691


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 104 KCLSIVRYQMK-FPKYQWYHLRQELCLKGESLR 199
           K LSI R   + F K++W  L ++L   G SLR
Sbjct: 338 KTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLR 370


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 125 YQMKF-PKYQWYHLRQELCLKGESLRS 202
           + MK+ PK++W+HL +++  +  +  S
Sbjct: 213 WNMKYLPKFKWHHLTEQIAAENAARES 239


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 391  LQTARQELSHALYQHDAACRVIARLTKEVTAAREAL 498
            ++ A ++  +A  +HD A  ++ARLT+ + A  E L
Sbjct: 937  VEQAAEDYLNAKEKHDQAKVLVARLTQLLQALEETL 972


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 52  ILRLRAEFSNLYSDIISKMSLYCAISNXXXXXXXXSPTSGAV 177
           IL + AEFSN+ +D+  K S+   I          S   GAV
Sbjct: 870 ILGILAEFSNILNDLKGKTSINEKIKTIVGIEKMLSLCGGAV 911


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,083
Number of Sequences: 5004
Number of extensions: 41656
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)