Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28d16
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0316 - 16688911-16689044,16689141-16689211,16689303-166893... 99 2e-21
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 29 2.3
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 29 2.3
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 29 3.1
04_01_0356 + 4663723-4664253 27 7.1
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 27 9.4
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 27 9.4
>10_08_0316 -
16688911-16689044,16689141-16689211,16689303-16689354,
16689589-16689685,16689764-16689841,16689938-16690054,
16690172-16690276,16691026-16691100,16691297-16691356,
16691454-16691549,16691838-16691954,16692142-16692260,
16692349-16692490,16694204-16694290,16694852-16694914,
16695081-16695161
Length = 497
Score = 99.1 bits (236), Expect = 2e-21
Identities = 51/102 (50%), Positives = 62/102 (60%)
Frame = +1
Query: 211 ENGVDPINGKELRVEDLXXXXXXXXXXXXXXSATSIPATLKSMQDEWDALMLHAFTQRQQ 390
++G P+ +EL ++D+ A SIP L Q+EWDA+ML +F QQ
Sbjct: 4 DHGKCPVTKEELTMDDIVAVKTNKVVKPRQLQAASIPGLLGMFQNEWDAIMLSSFALEQQ 63
Query: 391 LQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 516
L TARQELSHALYQHDAACRVIARL KE AR LA + Q
Sbjct: 64 LHTARQELSHALYQHDAACRVIARLKKERDEARALLAQAERQ 105
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 309 GTWRFWLYYRWCFDLNKVLNSQLLAVNRIHAIFYYVLLNDSPF 181
G +RFWL + F + + +L +H FYYVL ++ +
Sbjct: 151 GHYRFWLLWNSAFRVT--YSRMMLYTTPVHGTFYYVLRYEAEY 191
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 103 KMSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDL 261
++ YC G+VF+ I YI + G P+ G L+ EDL
Sbjct: 36 RLPFYCCALTFLPFEDPVCTADGSVFDLMSIIPYIKKFGKHPVTGTPLKQEDL 88
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 410 SCLAVCNCCLC-VKACNIRASHSSCMLFSVAGIDVALG 300
S LA C CC+C +KACN + ++ V LG
Sbjct: 667 SRLADCLCCMCCIKACNKMNDQCAIVMTQVCAAFACLG 704
>04_01_0356 + 4663723-4664253
Length = 176
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 389 CCLCVKACNIRASHSSCMLFSV-AGIDVALGGFGFTIG 279
C + + A N SH+S M+F+V +D+A G F G
Sbjct: 84 CIIVLLATNFYLSHTSVMVFNVLVALDMASLGAAFVAG 121
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 325 TLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALAT 504
TLKS ++ L +RQQ + R+E+ A + + R++A + T+ + +
Sbjct: 1057 TLKSFEESTKGLETSLMMERQQNEANRREVGEAQQRVEELLRLVADANGKSTSLQTTVQR 1116
Query: 505 LK 510
L+
Sbjct: 1117 LE 1118
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 517 PAVSVWRGPLAPPSPPL*VGLSH 449
P + VW LAPP PPL +H
Sbjct: 377 PLLPVWPRHLAPPPPPLPAAWAH 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,262
Number of Sequences: 37544
Number of extensions: 296030
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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