Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d16
         (530 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018698-1|AAH18698.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...   190   3e-48
BC018665-1|AAH18665.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...   190   3e-48
BC008719-1|AAH08719.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA pro...   190   3e-48
AJ131186-1|CAB51857.1|  504|Homo sapiens nuclear matrix protein ...   190   3e-48
AF111782-1|AAD29948.1| 1938|Homo sapiens myosin heavy chain prot...    31   1.9  
AF533682-1|AAQ10304.1|  133|Homo sapiens IL1RAPL1-dystrophin fus...    31   2.5  
BC054338-1|AAH54338.1|  985|Homo sapiens transmembrane protein 6...    29   7.7  
BC032835-1|AAH32835.1|  985|Homo sapiens TMEM67 protein protein.       29   7.7  

>BC018698-1|AAH18698.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score =  190 bits (462), Expect = 3e-48
 Identities = 95/140 (67%), Positives = 104/140 (74%)
 Frame = +1

Query: 106 MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXX 285
           MSL C+ISN        SP S  V+ERR+IEKYI ENG DPIN + L  E L        
Sbjct: 1   MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP 60

Query: 286 XXXXXXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARL 465
                 SATSIPA LK++QDEWDA+MLH+FT RQQLQT RQELSHALYQHDAACRVIARL
Sbjct: 61  IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL 120

Query: 466 TKEVTAAREALATLKPQAGI 525
           TKEVTAAREALATLKPQAG+
Sbjct: 121 TKEVTAAREALATLKPQAGL 140


>BC018665-1|AAH18665.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score =  190 bits (462), Expect = 3e-48
 Identities = 95/140 (67%), Positives = 104/140 (74%)
 Frame = +1

Query: 106 MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXX 285
           MSL C+ISN        SP S  V+ERR+IEKYI ENG DPIN + L  E L        
Sbjct: 1   MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP 60

Query: 286 XXXXXXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARL 465
                 SATSIPA LK++QDEWDA+MLH+FT RQQLQT RQELSHALYQHDAACRVIARL
Sbjct: 61  IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL 120

Query: 466 TKEVTAAREALATLKPQAGI 525
           TKEVTAAREALATLKPQAG+
Sbjct: 121 TKEVTAAREALATLKPQAGL 140


>BC008719-1|AAH08719.1|  504|Homo sapiens PRP19/PSO4 pre-mRNA
           processing factor 19 homolog (S. cerevisiae) protein.
          Length = 504

 Score =  190 bits (462), Expect = 3e-48
 Identities = 95/140 (67%), Positives = 104/140 (74%)
 Frame = +1

Query: 106 MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXX 285
           MSL C+ISN        SP S  V+ERR+IEKYI ENG DPIN + L  E L        
Sbjct: 1   MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP 60

Query: 286 XXXXXXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARL 465
                 SATSIPA LK++QDEWDA+MLH+FT RQQLQT RQELSHALYQHDAACRVIARL
Sbjct: 61  IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL 120

Query: 466 TKEVTAAREALATLKPQAGI 525
           TKEVTAAREALATLKPQAG+
Sbjct: 121 TKEVTAAREALATLKPQAGL 140


>AJ131186-1|CAB51857.1|  504|Homo sapiens nuclear matrix protein
           NMP200 protein.
          Length = 504

 Score =  190 bits (462), Expect = 3e-48
 Identities = 95/140 (67%), Positives = 104/140 (74%)
 Frame = +1

Query: 106 MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXX 285
           MSL C+ISN        SP S  V+ERR+IEKYI ENG DPIN + L  E L        
Sbjct: 1   MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP 60

Query: 286 XXXXXXSATSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARL 465
                 SATSIPA LK++QDEWDA+MLH+FT RQQLQT RQELSHALYQHDAACRVIARL
Sbjct: 61  IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL 120

Query: 466 TKEVTAAREALATLKPQAGI 525
           TKEVTAAREALATLKPQAG+
Sbjct: 121 TKEVTAAREALATLKPQAGL 140


>AF111782-1|AAD29948.1| 1938|Homo sapiens myosin heavy chain protein.
          Length = 1938

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 340  QDEWDALMLHAFT-QRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQ 516
            +DE    ++H    Q+ +LQT   ELSH + + ++   +I++LTK   A  + L  LK Q
Sbjct: 1266 KDEQQTQLIHDLNMQKARLQTQNGELSHRVEEKES---LISQLTKSKQALTQQLEELKRQ 1322


>AF533682-1|AAQ10304.1|  133|Homo sapiens IL1RAPL1-dystrophin fusion
           protein protein.
          Length = 133

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 15/66 (22%), Positives = 35/66 (53%)
 Frame = +1

Query: 310 TSIPATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIARLTKEVTAAR 489
           T +  T++ +Q++WD +  H   +RQQL    ++ +  L   + A +V+ +   ++ + +
Sbjct: 61  TELTVTVERIQNQWDEVQEHLQNRRQQLNEMLKDSTQWLEAKEEAEQVLGQARAKLESWK 120

Query: 490 EALATL 507
           E   T+
Sbjct: 121 EGPYTV 126


>BC054338-1|AAH54338.1|  985|Homo sapiens transmembrane protein 67
           protein.
          Length = 985

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 443 AASCWYNA*LNSCLAVCNCCLCVKACNIRASHSSCMLF 330
           AA+CW  A L SC A+ N C+        A+  +C LF
Sbjct: 224 AAACWVYANLTSCQALGNMCVMNMNSYDFATFDACGLF 261


>BC032835-1|AAH32835.1|  985|Homo sapiens TMEM67 protein protein.
          Length = 985

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 443 AASCWYNA*LNSCLAVCNCCLCVKACNIRASHSSCMLF 330
           AA+CW  A L SC A+ N C+        A+  +C LF
Sbjct: 224 AAACWVYANLTSCQALGNMCVMNMNSYDFATFDACGLF 261


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,304,796
Number of Sequences: 237096
Number of extensions: 1622463
Number of successful extensions: 5254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5245
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)