Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d12
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   3.4  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   3.4  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    24   5.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    24   7.8  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    24   7.8  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    24   7.8  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    24   7.8  

>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 211 VGGRTTHNPGTVEVSGFLGASKTLGPGDTDL 119
           +G    H  G+V   GF G+     P DT +
Sbjct: 70  IGSAIGHTVGSVITGGFSGSGSNNAPADTSV 100


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 238 SSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLGPGDTDL 119
           +SK+G+  +   R   +   + +  FL  S ++GPG T+L
Sbjct: 320 TSKIGLLKAYPNRVLMDKQGIHIGLFLEESPSIGPGMTNL 359


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 245 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGYRS 120
           +QV +    H+R+   HP S    S R  R   D+R  G RS
Sbjct: 316 TQVSRSSNHHRRYDSYHPDS-RSDSYRSKREHYDNRDTGPRS 356


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 100 DGLFCHDHGRQRHQYCCEDLHGYYQFTGSLEVE 2
           D + CH+   + H  C   L    QF+   EVE
Sbjct: 213 DAVACHERIARYHILCIHQLCEKKQFSAQQEVE 245


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 203 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAA 319
           A++A A P+        T+ RTS   +S  TNT++V  A
Sbjct: 13  ASSASALPNRTNTARRSTSPRTSTGSSSTNTNTKTVDHA 51


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 253 QCDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLG 137
           Q DH       +  +  ++T N GTV+  G    +K +G
Sbjct: 40  QLDHYGFPTASNFELNPKSTDNCGTVDFQGIPWGNKAIG 78


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 233 QDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSRPGGYR 123
           +DGG  +   ++   + YR S R  R   +  PG YR
Sbjct: 207 KDGGYRRNNYRDRDSNRYRNSYRPSRPQREHSPGNYR 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,053
Number of Sequences: 5004
Number of extensions: 19541
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)