Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28d12
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 32 0.11
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607... 29 1.3
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 1.8
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 2.3
10_02_0061 - 4812903-4812940,4813140-4813536 28 2.3
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 28 2.3
08_02_0588 + 19036509-19039235 28 2.3
04_03_0811 - 19909128-19912214 27 3.1
03_04_0198 - 18381668-18381830,18381903-18382060,18382164-183821... 27 3.1
02_05_0210 - 26795630-26795757,26797987-26798617 27 3.1
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600... 27 4.0
06_03_1105 - 27634787-27636025 27 4.0
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925... 27 4.0
11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755... 27 5.3
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 27 5.3
07_03_0753 + 21251216-21251221,21251486-21251557,21251920-212522... 27 5.3
07_01_0857 - 7127681-7127830,7128896-7129414 27 5.3
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 27 5.3
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175... 27 5.3
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806... 27 5.3
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 26 7.1
04_04_0902 - 29262611-29262673,29262796-29262909,29262995-292631... 26 7.1
03_06_0134 - 31923547-31924184,31925702-31926101 26 7.1
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 26 7.1
12_01_0132 - 990833-991287,991470-991593,991987-991991,992628-99... 26 9.3
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95... 26 9.3
05_05_0029 + 21694448-21694567,21694666-21695117,21695214-216955... 26 9.3
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 32.3 bits (70), Expect = 0.11
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -3
Query: 306 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 181
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>06_03_1301 -
29159262-29159810,29160360-29160493,29160615-29160750,
29161031-29161347,29161872-29161944
Length = 402
Score = 28.7 bits (61), Expect = 1.3
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -2
Query: 172 VSGFLGASKTLGP----GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTG 17
+ G + A K L P GD + + V + G + H + + YCCED H Y G
Sbjct: 108 IHGAVVAVKQLNPLGHQGDREWLTEVSYLGQYNHPNLVELIGYCCEDDHRLLVYEYMANG 167
Query: 16 SLE 8
SLE
Sbjct: 168 SLE 170
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 275 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 183
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 275 CGASLLTNTRSVTAAHC 325
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 63 WRWRPWSW---QKRPSNLTTTTRSVSPGPRVLDAPRKP 167
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 203 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQ 346
A N GA A V+ + +GR S+ +L + + AA WR+RR Q
Sbjct: 49 AVNGGA----AEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQ 92
>08_02_0588 + 19036509-19039235
Length = 908
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 242 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQ 346
V+ + +GR S+ +L + + AA WR+RR Q
Sbjct: 185 VVVIVSGRRSVGEPTLDVSEMLLQAAQAWRSRRTQ 219
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 302 GCWSVRKLRRWKFCHSSVRSQVQQDGGEHQRWRQ 201
GCWS+R+L + HS SQ + GE WR+
Sbjct: 962 GCWSLRRLPLLRQEHS---SQAVEVSGERAWWRK 992
>03_04_0198 -
18381668-18381830,18381903-18382060,18382164-18382199,
18382344-18382439,18382632-18382709,18382921-18383073,
18383261-18383365
Length = 262
Score = 27.5 bits (58), Expect = 3.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 181 YQDCGWFCRQRWCSPPSCWTCDR 249
Y++ GW+ Q W PP DR
Sbjct: 128 YEETGWYDGQMWVKPPEVLARDR 150
>02_05_0210 - 26795630-26795757,26797987-26798617
Length = 252
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 78 WSWQKRPSNLTTTTRSVSPGPRVLDA 155
W PS +T+ RS+SP PR+L A
Sbjct: 84 WVGDLHPSLVTSLLRSLSPSPRLLAA 109
>12_02_0188 -
15158824-15159215,15159299-15159809,15159885-15160015,
15160107-15160310,15160385-15161066,15161158-15161414,
15161491-15161631,15161731-15162136
Length = 907
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 293 SVRKLRRWKFCHSSVRS-QVQQDGGEHQRWRQNHPQSWYRRSQRLPRR 153
S RK+ RW + HS + + V GGE +W + Y Q RR
Sbjct: 336 SARKICRWLYNHSKLHAMMVSAIGGELVKWNATRFGTNYMFLQSFLRR 383
>06_03_1105 - 27634787-27636025
Length = 412
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 339 LLVLQQ*AAVTERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEP 196
LL L++ AAV E + PQ E +P S P R A AA+P
Sbjct: 95 LLPLRKAAAVPEMDAAAPRPPQPEAMPAPSEPMKPLRAATAAVDAADP 142
>03_06_0490 +
34289904-34289967,34291912-34292237,34292401-34292536,
34292651-34292793,34292880-34293003,34293562-34293963,
34294121-34294176
Length = 416
Score = 27.1 bits (57), Expect = 4.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -2
Query: 133 GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHG--YYQF--TGSLE 8
G + + V + G FCH + + YC ED H Y+F GSLE
Sbjct: 125 GHREWLAEVNYLGQFCHPNLVKLFGYCLEDEHRLLVYEFMPRGSLE 170
>11_06_0734 -
26774471-26774652,26775008-26775137,26775447-26775596,
26775685-26775918,26775990-26776161,26776285-26776506,
26776604-26776770,26776880-26777018,26777342-26777693,
26778175-26778370
Length = 647
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 230 DGGEHQRWRQNHPQSWYRRSQRLPRRV 150
DGG Q WR ++ R QR P RV
Sbjct: 120 DGGSQQSWRSTGGENIGDREQRKPLRV 146
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 87 QKRPSNLTTTTRSVSPGPRVLDAPRKPLT 173
+++PS T T +V PGP V D RKPL+
Sbjct: 182 KEKPSIGTVT--AVGPGPLVEDGSRKPLS 208
>07_03_0753 +
21251216-21251221,21251486-21251557,21251920-21252253,
21252596-21252733,21252811-21253202
Length = 313
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 293 SVRKLRRWKFCHSSVRSQVQQD-GGEHQRW 207
S RK+ RW + HS + + V GGE +W
Sbjct: 67 SARKICRWLYNHSKLHAMVTTTIGGELVKW 96
>07_01_0857 - 7127681-7127830,7128896-7129414
Length = 222
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -1
Query: 212 RWRQNH--PQSWYRRSQRLPRR 153
RWR+ H PQ W RR R P R
Sbjct: 113 RWRRCHWRPQRWRRRRWRFPLR 134
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 247 DHKSSKMGVSTSVGGRTTHNPGTVEVS 167
+HK +G +SV RTTH G EV+
Sbjct: 128 EHKGDTLGSVSSVEERTTHAQGRKEVT 154
>04_04_0842 +
28616729-28617078,28617166-28617359,28617416-28617582,
28617693-28617928,28618049-28618160
Length = 352
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 190 CGWFCRQRWCSPPSCWTCDR 249
C W C C P S W CD+
Sbjct: 334 CSW-CHYLTCVPTSSWKCDK 352
>01_01_1022 -
8064032-8064657,8064823-8064893,8065926-8066047,
8066540-8066689,8067153-8067179,8067485-8067552,
8067679-8067874
Length = 419
Score = 26.6 bits (56), Expect = 5.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 63 WRWRPWSWQKRPSNLTTTTRS 125
WRW+P W+K+ ++ + +S
Sbjct: 133 WRWQPLPWRKQTEDMLVSGKS 153
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 293 SVRKLRRWKFCHSSVRS-QVQQDGGEHQRW 207
S RK+ RW + HS + S V GGE +W
Sbjct: 383 SGRKICRWLYNHSKLHSMMVSAIGGELVKW 412
>04_04_0902 -
29262611-29262673,29262796-29262909,29262995-29263141,
29264922-29265005,29265151-29265225
Length = 160
Score = 26.2 bits (55), Expect = 7.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 221 EHQRWRQNHPQSWYRRSQRLP 159
E + WR+NHP + + + LP
Sbjct: 15 ERKAWRKNHPHGFVAKPETLP 35
>03_06_0134 - 31923547-31924184,31925702-31926101
Length = 345
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 200 NHPQSWYRRSQRLPRRV*DSRPGGYRSCC 114
+HPQ+ + + +RLPR V ++ P CC
Sbjct: 298 SHPQNLFDKLRRLPRSV-ETNPEDGTPCC 325
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = -1
Query: 242 QVQQDGGEHQRWRQNHP---QSWYRRSQRL 162
++ + G EH+ W + H Q W R QR+
Sbjct: 1463 RISRRGREHENWEETHHEYIQEWEARRQRI 1492
>12_01_0132 -
990833-991287,991470-991593,991987-991991,992628-992763,
993417-993751,994912-994966
Length = 369
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = -2
Query: 133 GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTGSLE 8
G + + V+F G H + + YCCED H + F GSLE
Sbjct: 125 GHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLE 170
>11_01_0121 -
948450-948904,949073-949224,949389-949449,950201-950336,
951042-951376,952523-952577
Length = 397
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = -2
Query: 133 GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTGSLE 8
G + + V+F G H + + YCCED H + F GSLE
Sbjct: 125 GHREWLTEVRFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLE 170
>05_05_0029 +
21694448-21694567,21694666-21695117,21695214-21695529,
21695863-21697122
Length = 715
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 260 HSSVRSQVQQDGGEHQRWRQNHPQSWY 180
H S R Q QQ G H R R +H + ++
Sbjct: 139 HESQRRQQQQLKGRHLRQRNSHRRGYF 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,664
Number of Sequences: 37544
Number of extensions: 171122
Number of successful extensions: 752
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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