Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28d08
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.49
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 27 1.1
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 26 2.6
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera... 26 3.5
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 4.6
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 4.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 4.6
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 6.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 6.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 8.0
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 0.49
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 206 AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEE 385
A+ ETKST ++ GG A +A P +P P +P P+ E +++
Sbjct: 867 AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPAT 923
Query: 386 RRRS 397
R +S
Sbjct: 924 RPKS 927
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 364 EAEGSRREET*LGS**DGRHCSEDGQDRGGVPHPQ 468
EAE R + LG G+HCSE G P P+
Sbjct: 320 EAEAKARRDKRLGELLTGKHCSECGTPLYSDPSPE 354
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 200 LLTDRDFEPAELRPTITTDKPI--INVELFATNTL 102
+L+ +F+PA+L P DKP+ + +E A +TL
Sbjct: 33 ILSGSEFDPAKLHPLADLDKPLDYLLIEEDALSTL 67
>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
formyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 260 GGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAAE 382
G + + VI A G P+ + T S+E ++EK+ AAE
Sbjct: 151 GAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKIHAAE 191
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 329 PEKTPSVEEIQEKLKAAEERRRSLE 403
PE TP+VE++ E L E R SL+
Sbjct: 301 PESTPAVEKVSENL--GSETRESLQ 323
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 314 RRADSPEKTPSVEEIQEKLK 373
RRAD PE+TPS ++ L+
Sbjct: 21 RRADRPEETPSSSVYEQNLR 40
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +2
Query: 161 DAVQLVRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 277
D L L R + +E E ++ +C E K L YE
Sbjct: 2536 DEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 278 VILAEPVGVPVPRRADSPEKTPSVEEIQEKL 370
V L +P+ P P A+S + T S E++ +L
Sbjct: 182 VSLPQPIAAPAPPSAESSKSTISDEDVAWQL 212
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 203 PLLTDRDFEPAELRPTITTDKPIINVELFAT-NTLTPIRRYSCYFKLNFKETE 48
P++ D E + K N E F + NT+T + +C+ +NF+E E
Sbjct: 923 PIIDLNDIYIDESNERVVKGKSKDNFEYFLSGNTVTRKKDNACFKMMNFEEIE 975
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 8.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 309 TGTPTGSASITSYARPPFDISWQRISVDLVSTSMASTFNRQRLRTS*TASD 157
T T TG+ S T + PPF + I + S+ + T + T+ TAS+
Sbjct: 331 TYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASN 381
Score = 24.6 bits (51), Expect = 8.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 309 TGTPTGSASITSYARPPFDISWQRISVDLVSTSMASTFNRQRLRTS*TASD 157
T T TG+ S T + PPF + I + S+ + T + T+ TAS+
Sbjct: 385 TYTGTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASN 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,133
Number of Sequences: 5004
Number of extensions: 23385
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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