Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d08
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521...    29   2.0  
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881...    27   6.0  
03_05_0048 + 20258561-20259346                                         27   6.0  
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678     27   6.0  

>05_01_0580 +
           5210002-5210170,5210466-5210524,5210883-5211668,
           5211898-5212737
          Length = 617

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 305 PVPRRADSPE-KTPSVEEIQEKLKAAEERRRSLE 403
           P PR ++    KTP + E++E +++ +ER ++LE
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLE 176


>11_06_0529 +
           24687027-24687064,24687150-24687610,24687709-24688124,
           24688688-24688860,24689733-24689868,24689914-24690264,
           24691170-24691344,24691761-24691822
          Length = 603

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 323 DSPEKTPSVEEIQEKLKAAEERRRSLE 403
           +SPE  P + E+ + L+  EE RRS+E
Sbjct: 515 NSPELRPKMSEVTQILQENEEDRRSVE 541


>03_05_0048 + 20258561-20259346
          Length = 261

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 346 RRRDPREAEGSRREET*LGS**DGRHCSEDGQDRGGVPHPQRADE 480
           +RR  R   GS   E   G+   GR   E+G+  GG P P+R  E
Sbjct: 133 KRRSDRGRGGSCEAEGGDGA--TGRRSGEEGEAAGGRPAPEREKE 175


>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
          Length = 258

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 209 WLPLLTDRDFEPAELRPTITTDKPIINVE 123
           WLP+L  R F PAE+       K I N+E
Sbjct: 104 WLPILERRSFGPAEITEWEELKKVIDNLE 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,228
Number of Sequences: 37544
Number of extensions: 163799
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)