Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28d08
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 2.4
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 2.4
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 4.1
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 27 5.5
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 27 5.5
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 27 7.2
AL032630-13|CAA21568.1| 348|Caenorhabditis elegans Hypothetical... 27 7.2
Z82264-9|CAB05167.2| 252|Caenorhabditis elegans Hypothetical pr... 27 9.5
U88167-2|AAB42225.3| 908|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 337 DSFRRRDPREAEGSRREET*LGS**DGRHCSEDGQDRGGVPHP 465
D+F+ + R ++GS +GS DG CS D + P P
Sbjct: 351 DTFKNQSRRSSQGSHDSAITMGSEEDGSRCSPDRDKQTPSPAP 393
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 337 DSFRRRDPREAEGSRREET*LGS**DGRHCSEDGQDRGGVPHP 465
D+F+ + R ++GS +GS DG CS D + P P
Sbjct: 351 DTFKNQSRRSSQGSHDSAITMGSEEDGSRCSPDRDKQTPSPAP 393
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 299 GVPVPRRADSPEKTPSVEEIQEKLKAAEERRRSL 400
GVP+P+ EK +E +EK+K+ EE R L
Sbjct: 179 GVPIPKIDIEIEKASPKKEKKEKVKSPEELTRRL 212
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 303 TPTGSASITSYARPPFDISWQRISVDLVSTSMASTFNRQRLRTS*TASDDHNRQTDNKCR 124
TP + + S PP S R + ++++ STFNR + + DD D+
Sbjct: 62 TPKSAPAPKSPKSPPARRSIPRAAATAANSTINSTFNRSEIEEMSDSDDDMRDDDDDDEE 121
Query: 123 IIRNK 109
I+ K
Sbjct: 122 ILSPK 126
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -2
Query: 303 TPTGSASITSYARPPFDISWQRISVDLVSTSMASTFNRQRLRTS*TASDDHNRQTDNKCR 124
TP + + S PP S R + ++++ STFNR + + DD D+
Sbjct: 62 TPKSAPAPKSPKSPPARRSIPRAAATAANSTINSTFNRSEIEEMSDSDDDMRDDDDDDEE 121
Query: 123 IIRNK 109
I+ K
Sbjct: 122 ILSPK 126
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 287 AEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEE 385
AE P P ++P P+VEE AAEE
Sbjct: 619 AEETPAPAPAVEETPAPAPAVEETPAPAPAAEE 651
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 287 AEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEE 385
AE P P ++P P+ EE AAEE
Sbjct: 687 AEETPAPAPAAEETPASAPAAEETPAPAPAAEE 719
>AL032630-13|CAA21568.1| 348|Caenorhabditis elegans Hypothetical
protein Y62H9A.13 protein.
Length = 348
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -3
Query: 194 TDRDFEPAELRPTITTDKPIINVELFATNTLTPIRRYSCYFKLNFKETED 45
+D D EL ++ + PI+ + A++T P+ S K + E +D
Sbjct: 93 SDEDDVDVELSNDVSNENPIVYYQKVASSTTNPVYNNSSEEKTHSAENQD 142
>Z82264-9|CAB05167.2| 252|Caenorhabditis elegans Hypothetical
protein C49C3.15 protein.
Length = 252
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 287 AEPVGVPVPRRADSPEKTPSVEEIQEKLKAAEERRRSLE 403
AE V V + S + ++EKLK +EER SLE
Sbjct: 84 AEAAAVDVASTSASSSDAQELTILREKLKLSEERNFSLE 122
>U88167-2|AAB42225.3| 908|Caenorhabditis elegans Hypothetical
protein D2092.5 protein.
Length = 908
Score = 26.6 bits (56), Expect = 9.5
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 191 RLKVEAMEVETKSTEIRCQEMSKGGLAY-EVILAEPVGVPVPRRAD-SPEKTPSVEEIQE 364
RLKVE ME++ S E R +E K L E A+ +G A S E+ +E +
Sbjct: 569 RLKVEQMEIKCSSIE-RHRESDKHQLEQAERKYADLLGKKAEIEATLSAERKARMEVTSK 627
Query: 365 KLKAAE---ERRRSLE 403
K AE ER R LE
Sbjct: 628 KYDVAEHQRERERQLE 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,325,648
Number of Sequences: 27780
Number of extensions: 140243
Number of successful extensions: 640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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