Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28d05
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       30   1.1  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   2.6  
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301...    28   4.5  
07_03_0600 + 19866757-19867218,19867920-19868429                       27   6.0  
01_03_0005 + 11568545-11569119,11569179-11569191                       24   7.5  
02_05_0963 - 33126238-33126831                                         27   7.9  
02_05_0320 + 27894604-27894785,27895990-27896043,27897544-278976...    27   7.9  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 28/92 (30%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
 Frame = +2

Query: 209 SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXXGYEPIDNRPYIVNPPK 373
           SN D GF      G PG  P+  G    P                Y P    P    PP 
Sbjct: 11  SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70

Query: 374 DYNPNGNGYEPIDNGAYYVDPPPRPTLLQAYP 469
            Y P+  GY P   GAY   PP        YP
Sbjct: 71  GYPPSQGGYPP---GAY---PPSGYPQQPGYP 96


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
 Frame = +2

Query: 386  NGNGYE-----PIDNGAYYVDPPPRPTLLQAYP 469
            +GN Y      P  N AY++ PPP P     YP
Sbjct: 1189 HGNNYHQPPSVPPPNNAYHLQPPPHPPFPNQYP 1221


>08_02_1512 +
           27627740-27629009,27629111-27629256,27629842-27630101,
           27630346-27630412,27630511-27630545,27630818-27631587,
           27631633-27631793
          Length = 902

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 341 DNRPYIVNPPKDYNPNGNGYEPIDNGAYYVD--PPPRPTLLQAY 466
           ++RP  VN    Y P      P   G+YY    PPP P  + A+
Sbjct: 215 EHRPQTVNATVHYYPGDGAAGPPLPGSYYGSAAPPPSPPRVSAW 258


>07_03_0600 + 19866757-19867218,19867920-19868429
          Length = 323

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 383 PNGNGYEPIDNGAYYVDPPPRPTLLQAYPL 472
           P  +G  P  +G Y   PPP+P   Q  PL
Sbjct: 20  PQVSGAPPPPHGHYQQQPPPQPYCQQQQPL 49


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 24.2 bits (50), Expect(2) = 7.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 362 NPPKDYNPNGNGYEPIDNGAYYVDPPP 442
           +PP  Y+  G G      G YY  PPP
Sbjct: 92  SPPPPYSGGGGGSSTGGGGIYY--PPP 116



 Score = 21.4 bits (43), Expect(2) = 7.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 416 GAYYVDPPPRPTL 454
           GAY   PPP P L
Sbjct: 135 GAYPTPPPPNPFL 147


>02_05_0963 - 33126238-33126831
          Length = 197

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 338 IDNRPYIVNPPKDYNPNG-NGYEPIDNGAYYVDPPPRPTL 454
           ID RP + +PP  Y+P G  G    D   +   PPP P L
Sbjct: 131 IDWRPVMAHPPPLYSPPGWGGGHAYD---FLQPPPPSPPL 167


>02_05_0320 +
           27894604-27894785,27895990-27896043,27897544-27897622,
           27899559-27899620,27899852-27899951,27901280-27901321,
           27901770-27901915,27902092-27902191
          Length = 254

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 407 IDNGAYYVDPPPRPTLLQAYP 469
           ++NGA YV PPP    + + P
Sbjct: 197 VENGAAYVQPPPHSAAMDSEP 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,108
Number of Sequences: 37544
Number of extensions: 271857
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)