Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c24
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-7|CAB03070.2|  116|Caenorhabditis elegans Hypothetical pr...   106   1e-23
Z66521-10|CAH10788.1|  359|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z66521-9|CAA91402.1|  367|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z81077-7|CAB03070.2|  116|Caenorhabditis elegans Hypothetical
           protein F36A2.8 protein.
          Length = 116

 Score =  106 bits (255), Expect = 1e-23
 Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
 Frame = +2

Query: 179 LHKVPKVDIDKSGVFKYILLKVYDQEVDGVEPSTIVLRGYKRCNYHSDIYDEVQGKLIPF 358
           L  +  VDID  GVFKYIL++V D   +  +    V+RGY RC++H DI  E +    P 
Sbjct: 3   LADIADVDIDPKGVFKYILIQVTD---NSTKQQKFVVRGYYRCSFHDDILQETKSSA-PS 58

Query: 359 DCEPW--GGGRISHDPDNKKIHIYGYSQAYGKADHEEAAKLIKNAYPDYTITISDEGY 526
           D +    GGGRI HD   K I +YGYS  YG+ADH+ A  ++K  YPDY I  S++GY
Sbjct: 59  DLKLKCVGGGRIKHDEIGKDILVYGYSYGYGRADHQIAVDILKQKYPDYNIHFSNDGY 116


>Z66521-10|CAH10788.1|  359|Caenorhabditis elegans Hypothetical
           protein W02B12.12b protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 359 QRGLIYLVPHHIYQSDSCIS 300
           QR   Y++PH ++ S SCIS
Sbjct: 304 QRNRQYVIPHSVFLSTSCIS 323


>Z66521-9|CAA91402.1|  367|Caenorhabditis elegans Hypothetical
           protein W02B12.12a protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 359 QRGLIYLVPHHIYQSDSCIS 300
           QR   Y++PH ++ S SCIS
Sbjct: 304 QRNRQYVIPHSVFLSTSCIS 323


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 245 YDQEVDGVEPSTIVLRGYKRCNYHSDIYDEVQGKLIPFDC 364
           YD  +DG+  ST+  R Y +C+          G+LIP +C
Sbjct: 377 YDCSIDGLFSSTLCSRNYHKCS---------NGQLIPHEC 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,866
Number of Sequences: 27780
Number of extensions: 338892
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)