Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28c23
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    58   8e-10
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   1.7  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   4.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.9  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   9.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.1  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   9.1  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 58.0 bits (134), Expect = 8e-10
 Identities = 32/132 (24%), Positives = 62/132 (46%)
 Frame = +1

Query: 130 DQTQNVVTDIITQHIDLITLVENMEGILTNKEPESREKGMRFFTKILTELPRDYLTVSQV 309
           D    +V +I+T  + ++ LV ++   LT+     R K +   ++ L ELP+D L    V
Sbjct: 22  DVVDRIVEEIVTDRMGIVDLVTSIGEYLTDNNISVRAKAVLLLSQTLGELPKDRLPAKHV 81

Query: 310 KFISKFYIDRLKDNHRVIPAVLQGFSAIIEMKNYDMETSGEFFSLLFREVNCQSQTRQDR 489
             + +FY+ RL D   +    L G  A++ M+N+  +   +    LF   +     +  R
Sbjct: 82  SVLLQFYLSRLDDEVTMKENAL-GIGALLNMQNFPAQKIVDVCKALFSSTDMPKYAQATR 140

Query: 490 YNIYFIVKKLME 525
            NI  + + +++
Sbjct: 141 LNILKVFETIID 152


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/79 (21%), Positives = 39/79 (49%)
 Frame = +1

Query: 259 TKILTELPRDYLTVSQVKFISKFYIDRLKDNHRVIPAVLQGFSAIIEMKNYDMETSGEFF 438
           T++ +E P+  +    +  +S+F  DRL  +H ++       + +I +    +E+  +F+
Sbjct: 584 TEVKSEPPKAVIYEEPLNKLSRFSSDRLFTSHELV-----AIAELISLNEPPLESGKKFY 638

Query: 439 SLLFREVNCQSQTRQDRYN 495
              F++  CQ +    RY+
Sbjct: 639 YEEFQKA-CQKKRDDYRYS 656


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +1

Query: 136 TQNVVTDIITQHIDLITLVENMEGILTNKEPESREKGMRFFTKILTELPRDYLTV 300
           T +     I+Q I      +  E +  NK+  S ++ +  F + +T+LP  ++ +
Sbjct: 272 TSSTCVSSISQPIQSTDCQKAQENLSNNKQMSSNDQDIDPFKQAITDLPPSFVNI 326


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 292  LTVSQVKFISKFYIDRLKDNHRVIPAVLQGFSAIIEMKNYDMETSGEFFSL 444
            ++   +K +S  +   L +  +++   L+GFS II +    ++ S  FF L
Sbjct: 4388 ISADNLKILSAVHEIHLNETEKIL---LEGFSKIICLPQDSVDISNNFFQL 4435


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -2

Query: 258 EESHSFFTTFWFFIG*NTLHVFN*SY*VYMLSYYISNYILRLIKYFIVIYYFLRKFRLEP 79
           E+SH  F  F  + G ++ H  +  +  YML ++     L  + +FIV+ YF+  + L+P
Sbjct: 239 EKSHHAF--FEIYEG-SSWHDSDAGFVFYMLHHWAIFTFLGFLTFFIVV-YFIFGYALKP 294


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +1

Query: 127 FDQTQNVVTDIITQHIDLITLVENMEGILTNKEPESREKGMRFFTKILTELPRDYLTVSQ 306
           F   +NV+TD+ T H  L  L   ++GI+      SR  G   F K  + L R +L+++ 
Sbjct: 261 FKNVKNVLTDVETYHEFLKLLNLYVQGIIDRNILVSRGFG---FLKSNSGLWRSFLSLTS 317

Query: 307 V 309
           +
Sbjct: 318 L 318


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 160 ITQHIDLITLVENMEGILTNKEPESREKGMRFFTKILTEL 279
           + Q ++  + +E +   LTN   ES +KG  F  K L  L
Sbjct: 81  VDQILENKSSIEKVHSHLTNNSTESNKKGKIFSRKELNRL 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,497
Number of Sequences: 5004
Number of extensions: 35805
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)